Variant report

Variant	rs58782672
Chromosome Location	chr12:47460145-47460146
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11183817	1.00[EUR][1000 genomes]
rs12296357	1.00[EUR][1000 genomes]
rs12296625	1.00[EUR][1000 genomes]
rs12297876	1.00[EUR][1000 genomes]
rs12298308	1.00[EUR][1000 genomes]
rs12299244	1.00[EUR][1000 genomes]
rs12322626	1.00[EUR][1000 genomes]
rs17097394	1.00[EUR][1000 genomes]
rs17097565	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17097665	1.00[EUR][1000 genomes]
rs17097666	1.00[EUR][1000 genomes]
rs73293901	1.00[EUR][1000 genomes]
rs73295559	1.00[EUR][1000 genomes]
rs73295573	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469368	chr12:47374908-47675680	Enhancers Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv558784	chr12:47374908-47675680	Genic enhancers Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:47458800-47464400	Enhancers	Colon Smooth Muscle	Colon
2	chr12:47459600-47460200	Enhancers	Fetal Brain Female	brain
3	chr12:47459600-47460800	Enhancers	Rectal Smooth Muscle	rectum
4	chr12:47459600-47461800	Enhancers	Stomach Smooth Muscle	stomach
5	chr12:47459600-47464200	Enhancers	Fetal Stomach	stomach
6	chr12:47459800-47460800	Enhancers	Ovary	ovary
7	chr12:47459800-47460800	Weak transcription	NHDF-Ad	bronchial
8	chr12:47459800-47461600	Weak transcription	Fetal Kidney	kidney
9	chr12:47459800-47461800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr12:47459800-47463000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:47460000-47460200	Enhancers	Aorta	Aorta
12	chr12:47460000-47460200	Enhancers	Fetal Brain Male	brain
13	chr12:47460000-47460200	Enhancers	Pancreas	Pancrea
14	chr12:47460000-47463200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:47460000-47464000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr12:47460000-47465800	Enhancers	Breast Myoepithelial Primary Cells	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links