Variant report

Variant	rs58793559
Chromosome Location	chr20:22813715-22813716
allele	-/TTGTTAA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv3334	chr20:22773462-22818362	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv510782	chr20:22806573-22907739	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3367802	chr20:22813369-22813851	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:22806200-22814000	Weak transcription	A549	lung
2	chr20:22808800-22814600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr20:22809000-22816000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr20:22809400-22816200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr20:22809600-22814400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr20:22809600-22816200	Weak transcription	NHEK	skin
7	chr20:22810200-22816000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr20:22813200-22815400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr20:22813400-22814200	Enhancers	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links