Variant report

Variant	rs58794660
Chromosome Location	chr15:51611192-51611193
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr15:51611061-51611326	HepG2	liver:	n/a	chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611232-51611243 chr15:51611232-51611245
2	HNF4G	chr15:51610997-51611409	HepG2	liver:	n/a	chr15:51611256-51611268 chr15:51611256-51611268 chr15:51611254-51611269 chr15:51611254-51611269
3	EP300	chr15:51610555-51611439	HepG2	liver:	n/a	n/a
4	CEBPB	chr15:51611049-51611447	ECC-1	luminal epithelium:	n/a	chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611232-51611243 chr15:51611232-51611245
5	TBP	chr15:51610608-51611385	HepG2	liver:	n/a	n/a
6	CEBPB	chr15:51611034-51611496	MCF-7	breast:	n/a	chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611232-51611243 chr15:51611232-51611245
7	CEBPB	chr15:51611044-51611418	K562	blood:	n/a	chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611232-51611243 chr15:51611232-51611245
8	ARID3A	chr15:51610533-51611743	HepG2	liver:	n/a	n/a
9	JUND	chr15:51610653-51611445	HepG2	liver:	n/a	chr15:51611314-51611323
10	CEBPB	chr15:51610689-51611449	HepG2	liver:	n/a	chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611232-51611243 chr15:51611232-51611245
11	CEBPB	chr15:51610676-51611447	HepG2	liver:	n/a	chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611232-51611243 chr15:51611232-51611245
12	CREB1	chr15:51610550-51611432	HepG2	liver:	n/a	n/a
13	SP1	chr15:51610526-51611429	HepG2	liver:	n/a	chr15:51611305-51611326
14	CEBPB	chr15:51611050-51611429	A549	lung:	n/a	chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611232-51611243 chr15:51611232-51611245
15	POLR2A	chr15:51610456-51611320	HepG2	liver:	n/a	n/a
16	CEBPB	chr15:51611036-51611472	A549	lung:	n/a	chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611232-51611243 chr15:51611232-51611245
17	MYBL2	chr15:51610893-51611527	HepG2	liver:	n/a	n/a
18	RCOR1	chr15:51610546-51611374	HepG2	liver:	n/a	n/a
19	CEBPB	chr15:51611060-51611422	HepG2	liver:	n/a	chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611232-51611243 chr15:51611232-51611245
20	MAZ	chr15:51610663-51611412	HepG2	liver:	n/a	n/a
21	HNF4A	chr15:51610637-51611449	HepG2	liver:	n/a	chr15:51611256-51611268 chr15:51611256-51611268 chr15:51611254-51611269 chr15:51611254-51611269 chr15:51611254-51611269
22	HNF4A	chr15:51611008-51611350	HepG2	liver:	n/a	chr15:51611256-51611268 chr15:51611256-51611268 chr15:51611254-51611269 chr15:51611254-51611269 chr15:51611254-51611269
23	CEBPB	chr15:51611063-51611348	K562	blood:	n/a	chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611232-51611243 chr15:51611232-51611245
24	CEBPB	chr15:51611035-51611397	ECC-1	luminal epithelium:	n/a	chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611232-51611243 chr15:51611232-51611245
25	CEBPB	chr15:51611054-51611428	IMR90	lung:	n/a	chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611232-51611243 chr15:51611232-51611245
26	MBD4	chr15:51610870-51611390	HepG2	liver:	n/a	n/a
27	CEBPB	chr15:51611067-51611406	Hela-S3	cervix:	n/a	chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611232-51611243 chr15:51611232-51611245
28	EP300	chr15:51610573-51611409	HepG2	liver:	n/a	n/a
29	MYBL2	chr15:51610961-51611458	HepG2	liver:	n/a	n/a
30	HNF4A	chr15:51611052-51611400	HepG2	liver:	n/a	chr15:51611256-51611268 chr15:51611256-51611268 chr15:51611254-51611269 chr15:51611254-51611269 chr15:51611254-51611269
31	CEBPB	chr15:51610926-51611504	A549	lung:	n/a	chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611232-51611243 chr15:51611232-51611245
32	CEBPD	chr15:51611072-51611327	HepG2	liver:	n/a	chr15:51611233-51611244 chr15:51611234-51611243 chr15:51611233-51611244
33	NFIC	chr15:51610731-51611440	HepG2	liver:	n/a	n/a
34	CEBPB	chr15:51611050-51611435	H1-hESC	embryonic stem cell:	n/a	chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611232-51611243 chr15:51611232-51611245
35	CREB1	chr15:51610906-51611466	HepG2	liver:	n/a	n/a
36	MXI1	chr15:51610567-51611331	HepG2	liver:	n/a	n/a
37	CEBPB	chr15:51610917-51611482	MCF-7	breast:	n/a	chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611234-51611243 chr15:51611232-51611243 chr15:51611232-51611245
38	CEBPD	chr15:51611065-51611398	HepG2	liver:	n/a	chr15:51611233-51611244 chr15:51611234-51611243 chr15:51611233-51611244
39	TEAD4	chr15:51610646-51611378	HepG2	liver:	n/a	n/a
40	BHLHE40	chr15:51610327-51611319	HepG2	liver:	n/a	n/a
41	SMC3	chr15:51610789-51611418	HepG2	liver:	n/a	n/a
42	MAX	chr15:51610429-51611480	HepG2	liver:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DMXL2-2	chr15:51610630-51611196	NONHSAT043858

Variant related genes	Relation type
CYP19A1	TF binding region

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs16964265	1.00[AMR][1000 genomes]
rs28973137	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61995718	1.00[AMR][1000 genomes]
rs9282665	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9282669	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047443	chr15:50744781-51647023	Strong transcription Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	nsv569400	chr15:50874964-51767265	ZNF genes & repeats Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	esv34532	chr15:51276128-51752856	Flanking Active TSS Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv2758382	chr15:51282257-51830339	Enhancers Bivalent/Poised TSS Weak transcription Bivalent Enhancer Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv2760031	chr15:51282257-51830339	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv471243	chr15:51345485-52018096	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
7	esv2757600	chr15:51352249-51783981	Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
8	nsv904215	chr15:51542193-51673125	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:51592200-51615000	Weak transcription	Spleen	Spleen
2	chr15:51600400-51614200	Weak transcription	Right Atrium	heart
3	chr15:51603600-51612600	Enhancers	Fetal Intestine Small	intestine
4	chr15:51604000-51612200	Enhancers	Fetal Intestine Large	intestine
5	chr15:51605000-51615200	Weak transcription	Left Ventricle	heart
6	chr15:51607000-51614200	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr15:51607600-51614200	Weak transcription	Right Ventricle	heart
8	chr15:51607600-51617400	Weak transcription	Pancreas	Pancrea
9	chr15:51609000-51617600	Genic enhancers	Placenta	Placenta
10	chr15:51609600-51611400	Flanking Active TSS	HepG2	liver
11	chr15:51609600-51621000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:51609800-51611600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:51609800-51613200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr15:51610200-51611400	Enhancers	Brain Cingulate Gyrus	brain
15	chr15:51610200-51612000	Enhancers	HSMMtube	muscle
16	chr15:51610400-51611400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr15:51610400-51611400	Enhancers	HSMM	muscle
18	chr15:51610400-51611600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:51610600-51611200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:51610600-51611200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr15:51610600-51611200	Enhancers	Brain Substantia Nigra	brain
22	chr15:51610600-51611200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr15:51610600-51611400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr15:51610600-51611400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr15:51610600-51611400	Enhancers	Brain Angular Gyrus	brain
26	chr15:51610600-51611400	Enhancers	Brain Hippocampus Middle	brain
27	chr15:51610600-51611400	Enhancers	Brain Inferior Temporal Lobe	brain
28	chr15:51610600-51611400	Enhancers	Fetal Muscle Trunk	muscle
29	chr15:51610600-51611400	Enhancers	Osteobl	bone
30	chr15:51610800-51611400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:51610800-51611400	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links