Variant report

Variant	rs587959
Chromosome Location	chr3:59832536-59832537
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11925272	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13316171	0.85[YRI][hapmap]
rs1485733	0.85[YRI][hapmap]
rs615832	0.85[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs655011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs672802	1.00[AFR][1000 genomes]
rs780715	0.95[AFR][1000 genomes]
rs780716	0.83[AFR][1000 genomes]
rs9842626	0.82[YRI][hapmap]
rs9847503	0.83[YRI][hapmap]
rs9863246	0.82[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014601	chr3:59666609-59888166	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
2	nsv428085	chr3:59782509-60070116	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv876837	chr3:59800539-59842644	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Strong transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv460564	chr3:59821071-59927727	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv590384	chr3:59821071-59927727	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:59827000-59842800	Weak transcription	Thymus	Thymus
2	chr3:59827200-59843400	Weak transcription	Dnd41	blood
3	chr3:59827400-59842800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr3:59828000-59842800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr3:59828200-59833400	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr3:59828400-59833400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr3:59832000-59832600	Weak transcription	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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