Variant report

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAL1	chr11:71845652-71846015	K562	blood:	n/a	n/a
2	GATA1	chr11:71845642-71846026	PBDE	blood:	n/a	n/a
3	BHLHE40	chr11:71845660-71845839	K562	blood:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:71841111..71843953-chr11:71844443..71847112,3	K562	blood:
2	chr11:71844582..71846658-chr11:71846773..71848277,2	K562	blood:
3	chr11:71843841..71846091-chr11:71912939..71915274,2	MCF-7	breast:
4	chr11:71821479..71826547-chr11:71844956..71851162,6	K562	blood:

No data

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12576505	0.82[ASN][1000 genomes]
rs1802608	1.00[ASN][1000 genomes]
rs1802609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs533207	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55712714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57527670	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57607585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60177475	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925055	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7925545	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926360	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926875	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7926987	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7927110	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7936965	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7939676	0.82[ASN][1000 genomes]
rs7939902	0.82[ASN][1000 genomes]
rs7950807	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530623	chr11:71088949-72020418	Enhancers Transcr. at gene 5' and 3' Active TSS Strong transcription Bivalent Enhancer Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	134 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs58798436	FOLR3	cis	Thyroid	GTEx
rs58798436	FOLR2	cis	Whole Blood	GTEx
rs58798436	FOLR3	cis	Whole Blood	GTEx
rs58798436	RP11-807H22.6	cis	Whole Blood	GTEx
rs58798436	FOLR3	cis	lung	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:71828400-71850800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:71834400-71851000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr11:71836000-71847000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr11:71836800-71847000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:71839800-71846600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr11:71844000-71847400	Weak transcription	Primary hematopoietic stem cells	blood
7	chr11:71844400-71846400	Weak transcription	Spleen	Spleen
8	chr11:71844600-71847800	Weak transcription	NHEK	skin
9	chr11:71845600-71848800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
10	chr11:71845800-71847800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

Quick Search: