Variant report

Variant	rs58798706
Chromosome Location	chr7:124899079-124899080
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs17148052	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17148056	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17148062	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17148065	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17148076	1.00[EUR][1000 genomes]
rs60778670	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394090	chr7:124602150-124900799	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
2	esv2422188	chr7:124782873-125254203	Enhancers Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1029627	chr7:124810399-124901651	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv2761087	chr7:124823624-125429662	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:124896000-124900000	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
2	chr7:124897800-124899200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr7:124897800-124899400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr7:124898000-124900000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:124898200-124899400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr7:124898200-124899800	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:124898600-124899400	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:124898600-124901200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr7:124898800-124899200	Weak transcription	K562	blood
10	chr7:124898800-124899400	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr7:124898800-124899400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr7:124898800-124902000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr7:124899000-124899200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr7:124899000-124899800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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