Variant report

Variant	rs58804518
Chromosome Location	chr5:15788760-15788761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10434653	0.83[EUR][1000 genomes]
rs10434654	0.83[EUR][1000 genomes]
rs10462597	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10520823	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12515169	0.83[EUR][1000 genomes]
rs12515445	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12516275	0.83[EUR][1000 genomes]
rs12517648	0.83[EUR][1000 genomes]
rs12518052	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12520066	0.83[EUR][1000 genomes]
rs12522526	0.87[EUR][1000 genomes]
rs12522561	0.87[EUR][1000 genomes]
rs12655750	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1505040	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs16867589	0.83[EUR][1000 genomes]
rs17647886	0.83[EUR][1000 genomes]
rs17647898	0.87[EUR][1000 genomes]
rs17704227	0.83[EUR][1000 genomes]
rs17704245	0.83[EUR][1000 genomes]
rs4296803	0.87[EUR][1000 genomes]
rs4377704	0.83[EUR][1000 genomes]
rs4391162	0.83[EUR][1000 genomes]
rs4593267	0.83[EUR][1000 genomes]
rs4701643	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4702110	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58818319	0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59041652	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59800782	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73755514	0.80[EUR][1000 genomes]
rs73755515	0.83[EUR][1000 genomes]
rs73755516	0.83[EUR][1000 genomes]
rs73755517	0.83[EUR][1000 genomes]
rs9637827	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9637832	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9790923	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv830214	chr5:15589809-15791032	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3507774	chr5:15593461-15822407	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv3507776	chr5:15593461-15822407	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv1028089	chr5:15636285-15883910	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv537676	chr5:15636285-15883910	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv1024248	chr5:15638067-15863583	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv537677	chr5:15638067-15863583	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv880755	chr5:15670377-15938553	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
13	esv2757107	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv2759327	chr5:15678556-15810987	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	esv2763894	chr5:15714022-15863332	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv1031483	chr5:15738485-15926083	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15764200-15796800	Weak transcription	Aorta	Aorta
2	chr5:15782600-15789400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:15784200-15792800	Weak transcription	Ovary	ovary
4	chr5:15785400-15789400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr5:15785800-15792600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr5:15786000-15789600	Weak transcription	Right Atrium	heart
7	chr5:15786000-15792000	Weak transcription	Brain Angular Gyrus	brain
8	chr5:15786000-15792800	Weak transcription	Spleen	Spleen
9	chr5:15786000-15793800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr5:15786000-15794200	Weak transcription	Fetal Brain Female	brain
11	chr5:15786200-15789800	Weak transcription	Fetal Heart	heart
12	chr5:15786600-15794000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr5:15787200-15789200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr5:15787200-15789800	Weak transcription	NHDF-Ad	bronchial
15	chr5:15787400-15789600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr5:15787400-15794000	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr5:15787600-15790800	Weak transcription	Brain Anterior Caudate	brain
18	chr5:15787600-15791600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr5:15787600-15791600	Weak transcription	Brain Hippocampus Middle	brain
20	chr5:15787600-15793800	Weak transcription	Adipose Nuclei	Adipose
21	chr5:15787600-15796600	Weak transcription	Right Ventricle	heart
22	chr5:15787800-15789800	Weak transcription	HUVEC	blood vessel
23	chr5:15787800-15791600	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr5:15788200-15789800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr5:15788200-15794200	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr5:15788400-15789400	Weak transcription	Left Ventricle	heart
27	chr5:15788400-15789600	Weak transcription	HSMMtube	muscle
28	chr5:15788400-15790400	Weak transcription	Brain Substantia Nigra	brain
29	chr5:15788600-15789000	ZNF genes & repeats	Fetal Stomach	stomach
30	chr5:15788600-15789800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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