Variant report

Variant	rs58805625
Chromosome Location	chr13:51695419-51695420
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs3926805	0.94[ASN][1000 genomes]
rs60395954	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73188245	0.88[AMR][1000 genomes]
rs73188247	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7329231	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7989750	0.95[ASN][1000 genomes]
rs7989773	0.95[ASN][1000 genomes]
rs7989922	0.95[ASN][1000 genomes]
rs9563026	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832610	chr13:51636661-51822106	Bivalent/Poised TSS Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51690000-51697000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr13:51691800-51697400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr13:51692600-51697000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr13:51692600-51697200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr13:51693200-51697200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:51693200-51700800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr13:51693800-51697000	Weak transcription	Pancreas	Pancrea
8	chr13:51694400-51695600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:51695200-51695600	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr13:51695200-51695600	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr13:51695400-51695600	Enhancers	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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