Variant report

Variant	rs58806356
Chromosome Location	chr16:79541257-79541258
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs56411442	0.80[AFR][1000 genomes]
rs59298101	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs74037314	0.85[AFR][1000 genomes]
rs74037335	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915801	chr16:78957628-79541700	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv2754467	chr16:79539799-79598399	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79539400-79542000	Weak transcription	Psoas Muscle	Psoas
2	chr16:79539600-79543000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:79539800-79541800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr16:79539800-79542000	Weak transcription	Placenta	Placenta
5	chr16:79539800-79543200	Weak transcription	Lung	lung
6	chr16:79539800-79553000	Weak transcription	Right Atrium	heart
7	chr16:79540600-79543200	Weak transcription	Spleen	Spleen
8	chr16:79540800-79541800	Weak transcription	Adipose Nuclei	Adipose
9	chr16:79540800-79542400	Weak transcription	Fetal Muscle Leg	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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