Variant report

Variant	rs58814142
Chromosome Location	chr1:184790273-184790274
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs16823452	1.00[EUR][1000 genomes]
rs16823480	1.00[EUR][1000 genomes]
rs16823513	1.00[EUR][1000 genomes]
rs2181240	1.00[EUR][1000 genomes]
rs234637	1.00[EUR][1000 genomes]
rs234638	1.00[EUR][1000 genomes]
rs234639	1.00[EUR][1000 genomes]
rs234666	1.00[EUR][1000 genomes]
rs234671	1.00[EUR][1000 genomes]
rs234675	1.00[EUR][1000 genomes]
rs28521358	1.00[EUR][1000 genomes]
rs35543943	1.00[EUR][1000 genomes]
rs56385425	1.00[EUR][1000 genomes]
rs56707979	1.00[EUR][1000 genomes]
rs56796054	1.00[EUR][1000 genomes]
rs61372488	1.00[EUR][1000 genomes]
rs6664204	1.00[EUR][1000 genomes]
rs669649	1.00[EUR][1000 genomes]
rs73046783	1.00[EUR][1000 genomes]
rs73046796	1.00[EUR][1000 genomes]
rs7413163	1.00[EUR][1000 genomes]
rs74132003	1.00[EUR][1000 genomes]
rs74132025	1.00[EUR][1000 genomes]
rs74132034	1.00[EUR][1000 genomes]
rs74132036	1.00[EUR][1000 genomes]
rs74132037	1.00[EUR][1000 genomes]
rs74132038	1.00[EUR][1000 genomes]
rs74132050	1.00[EUR][1000 genomes]
rs74134139	1.00[EUR][1000 genomes]
rs7521888	1.00[EUR][1000 genomes]
rs7526101	1.00[EUR][1000 genomes]
rs7528332	1.00[EUR][1000 genomes]
rs7541371	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001323	chr1:184525419-185315876	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv535222	chr1:184525419-185315876	Weak transcription Enhancers Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv917126	chr1:184655366-184902273	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	nsv832048	chr1:184660146-184858802	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv508677	chr1:184778620-184825302	Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv3832	chr1:184784442-184792671	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:184756800-184794000	Weak transcription	Thymus	Thymus
2	chr1:184762600-184792800	Weak transcription	Colonic Mucosa	Colon
3	chr1:184768000-184809200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr1:184772000-184792000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:184772400-184801800	Weak transcription	Primary T cells from cord blood	blood
6	chr1:184772800-184790600	Weak transcription	Primary T helper cells fromperipheralblood	blood
7	chr1:184773200-184809400	Weak transcription	Primary T helper cells PMA-I stimulated	--
8	chr1:184775400-184791600	Weak transcription	Stomach Mucosa	stomach
9	chr1:184775600-184796800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr1:184775800-184794000	Weak transcription	Primary B cells from peripheral blood	blood
11	chr1:184777000-184792200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr1:184777400-184791600	Weak transcription	Pancreas	Pancrea
13	chr1:184778000-184791400	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr1:184781200-184793400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:184781400-184792000	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr1:184781600-184790800	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr1:184781600-184793400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr1:184783000-184807800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr1:184783200-184791200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:184783200-184791200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr1:184783200-184796400	Weak transcription	NHLF	lung
22	chr1:184783200-184796800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr1:184783200-184796800	Weak transcription	NHDF-Ad	bronchial
24	chr1:184783200-184809200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr1:184783400-184803200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr1:184784000-184793200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr1:184784200-184794000	Strong transcription	Cortex derived primary cultured neurospheres	brain
28	chr1:184785200-184791000	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr1:184785400-184801200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr1:184785800-184791000	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr1:184786000-184797800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
32	chr1:184786200-184792800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr1:184786600-184796000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr1:184786600-184805200	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr1:184786800-184793000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr1:184786800-184793600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
37	chr1:184787000-184792000	Strong transcription	Gastric	stomach
38	chr1:184787000-184792800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr1:184787400-184792800	Strong transcription	Primary T cells fromperipheralblood	blood
40	chr1:184787400-184794200	Strong transcription	Stomach Smooth Muscle	stomach
41	chr1:184787600-184790400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr1:184787600-184790400	Strong transcription	GM12878-XiMat	blood
43	chr1:184787600-184792400	Strong transcription	Aorta	Aorta
44	chr1:184787800-184791400	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr1:184787800-184796800	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr1:184787800-184799000	Weak transcription	H9 Cell Line	embryonic stem cell
47	chr1:184788000-184797400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr1:184788200-184791000	Weak transcription	Esophagus	oesophagus
49	chr1:184788200-184796200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr1:184788600-184796800	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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