Variant report

Variant	rs58817163
Chromosome Location	chr2:34477056-34477057
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:34469910..34471896-chr2:34475795..34477495,2	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs11888679	0.92[EUR][1000 genomes]
rs11891597	0.85[EUR][1000 genomes]
rs11894504	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894585	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894626	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11894639	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11900172	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11900277	0.92[EUR][1000 genomes]
rs17014886	0.88[EUR][1000 genomes]
rs2193804	0.87[ASN][1000 genomes]
rs4462767	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4484013	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4505502	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4556955	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55939505	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72781161	0.81[EUR][1000 genomes]
rs72781162	0.88[EUR][1000 genomes]
rs72782916	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782919	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782920	0.92[EUR][1000 genomes]
rs72782922	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782924	1.00[ASN][1000 genomes]
rs72782926	0.92[EUR][1000 genomes]
rs72782928	0.92[EUR][1000 genomes]
rs72782931	0.90[EUR][1000 genomes]
rs72782932	1.00[ASN][1000 genomes]
rs72782937	1.00[ASN][1000 genomes]
rs72782938	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782939	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782940	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782942	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782943	0.92[EUR][1000 genomes]
rs72782944	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782945	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782947	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782951	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782952	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782954	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782956	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782958	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782959	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782961	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782963	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782964	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782965	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782966	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782971	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782972	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782974	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782975	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782977	1.00[ASN][1000 genomes]
rs72782978	0.86[EUR][1000 genomes]
rs72782982	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782983	1.00[ASN][1000 genomes]
rs72782985	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72782993	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72782995	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72782998	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs72782999	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72783002	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72784803	0.96[EUR][1000 genomes]
rs72784805	0.96[EUR][1000 genomes]
rs72784813	0.94[EUR][1000 genomes]
rs741556	0.90[EUR][1000 genomes]
rs741557	0.90[EUR][1000 genomes]
rs7575593	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006001	chr2:33991364-34858721	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	nsv535628	chr2:33991364-34858721	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv873799	chr2:33996983-34821990	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv999091	chr2:34154486-34993188	ZNF genes & repeats Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv535629	chr2:34154486-34993188	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv873804	chr2:34156867-35047107	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	nsv873808	chr2:34275757-34703057	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv833714	chr2:34348193-34504892	Active TSS ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv873810	chr2:34456200-35047107	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv1010274	chr2:34468037-34738307	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
11	nsv535631	chr2:34468037-34738307	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:34468200-34479200	Weak transcription	Pancreas	Pancrea
2	chr2:34468400-34477200	Weak transcription	Fetal Lung	lung
3	chr2:34473200-34479200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr2:34474600-34477600	Enhancers	Fetal Intestine Large	intestine
5	chr2:34475600-34480800	Enhancers	Fetal Intestine Small	intestine
6	chr2:34476400-34477600	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr2:34477000-34477400	Enhancers	Rectal Mucosa Donor 29	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links