Variant report

Variant	rs58819337
Chromosome Location	chr8:125048366-125048367
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:125046100..125050164-chr8:125382884..125386707,6	MCF-7	breast:
2	chr8:125041034..125043995-chr8:125047107..125050241,3	MCF-7	breast:
3	chr8:125031985..125034718-chr8:125046553..125048849,2	MCF-7	breast:
4	chr8:125046543..125048500-chr8:125050991..125052499,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM65-3	chr8:125048251-125048548	ENSG00000254249.1

Variant related genes	Relation type
ENSG00000164983	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs57196394	0.90[AMR][1000 genomes]
rs57275714	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs59350680	0.90[AMR][1000 genomes]
rs59543900	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60163182	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs60932022	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6470215	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6983493	0.90[AMR][1000 genomes]
rs6987660	0.92[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6988620	0.85[AFR][1000 genomes]
rs7827774	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:124971800-125052000	Weak transcription	Gastric	stomach
2	chr8:125031000-125048600	Weak transcription	Stomach Mucosa	stomach
3	chr8:125041000-125048400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr8:125043200-125049000	Weak transcription	Psoas Muscle	Psoas
5	chr8:125043600-125051200	Weak transcription	Right Ventricle	heart
6	chr8:125044400-125049000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr8:125045200-125053000	Enhancers	Fetal Heart	heart
8	chr8:125045600-125049400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr8:125046200-125051200	Weak transcription	Right Atrium	heart
10	chr8:125046200-125052000	Weak transcription	Fetal Stomach	stomach
11	chr8:125046400-125048400	Weak transcription	Left Ventricle	heart
12	chr8:125046600-125051600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr8:125046600-125052000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr8:125046800-125050000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr8:125047000-125049000	Weak transcription	Fetal Muscle Leg	muscle
16	chr8:125047000-125051200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr8:125047000-125051200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr8:125047000-125051400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr8:125047000-125052000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr8:125047000-125052000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr8:125047000-125052200	Weak transcription	Primary monocytes fromperipheralblood	blood
22	chr8:125047000-125052200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr8:125047400-125052400	Weak transcription	Primary B cells from peripheral blood	blood
24	chr8:125047400-125052600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr8:125047400-125053000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr8:125047400-125053400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
27	chr8:125048200-125048800	Enhancers	K562	blood

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