Variant report

Variant	rs58820272
Chromosome Location	chr7:66471386-66471387
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:66463795..66466236-chr7:66470895..66472750,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs17748258	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs41520746	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58531170	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6972674	0.84[ASN][1000 genomes]
rs73700322	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs73700324	0.81[ASN][1000 genomes]
rs7796639	0.80[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758118	chr7:66401430-66859253	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	esv2759535	chr7:66401430-66859253	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv1032575	chr7:66432853-66576034	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:66462200-66482600	Weak transcription	Aorta	Aorta
2	chr7:66462400-66472200	Weak transcription	Brain Cingulate Gyrus	brain
3	chr7:66462400-66472200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:66462400-66475400	Weak transcription	Colon Smooth Muscle	Colon
5	chr7:66462400-66475800	Weak transcription	Right Ventricle	heart
6	chr7:66462400-66476000	Weak transcription	Colonic Mucosa	Colon
7	chr7:66462400-66476400	Weak transcription	Gastric	stomach
8	chr7:66462400-66478400	Weak transcription	Pancreas	Pancrea
9	chr7:66462400-66479400	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr7:66462400-66482200	Weak transcription	Small Intestine	intestine
11	chr7:66462400-66482600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr7:66462400-66490000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr7:66462400-66496000	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr7:66462400-66500200	Weak transcription	Psoas Muscle	Psoas
15	chr7:66462400-66508000	Weak transcription	Stomach Mucosa	stomach
16	chr7:66462600-66471800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr7:66462600-66472000	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr7:66462600-66473000	Weak transcription	HSMMtube	muscle
19	chr7:66462600-66474000	Weak transcription	Osteobl	bone
20	chr7:66462600-66474200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr7:66462600-66474200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr7:66462600-66474400	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr7:66462600-66474400	Weak transcription	Brain Anterior Caudate	brain
24	chr7:66462600-66475400	Weak transcription	Brain Hippocampus Middle	brain
25	chr7:66462600-66475800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr7:66462600-66475800	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr7:66462600-66476000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr7:66462600-66476400	Weak transcription	Brain Angular Gyrus	brain
29	chr7:66462600-66476400	Weak transcription	NHLF	lung
30	chr7:66462600-66479000	Weak transcription	Fetal Brain Female	brain
31	chr7:66462600-66479200	Weak transcription	Fetal Kidney	kidney
32	chr7:66462600-66480600	Weak transcription	Rectal Smooth Muscle	rectum
33	chr7:66462600-66482800	Weak transcription	NHEK	skin
34	chr7:66462600-66484600	Weak transcription	HUVEC	blood vessel
35	chr7:66462600-66487600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
36	chr7:66462600-66497200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr7:66462800-66474000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr7:66462800-66476000	Weak transcription	Left Ventricle	heart
39	chr7:66462800-66494600	Weak transcription	Esophagus	oesophagus
40	chr7:66463000-66472200	Weak transcription	Primary hematopoietic stem cells	blood
41	chr7:66463000-66473400	Weak transcription	Rectal Mucosa Donor 31	rectum
42	chr7:66463000-66476200	Weak transcription	Brain Substantia Nigra	brain
43	chr7:66463000-66487200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr7:66463000-66507800	Weak transcription	Fetal Brain Male	brain
45	chr7:66463200-66476400	Weak transcription	HepG2	liver
46	chr7:66463200-66482600	Weak transcription	HMEC	breast
47	chr7:66463200-66483000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr7:66463200-66484800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr7:66463200-66487400	Weak transcription	NH-A	brain
50	chr7:66463200-66510000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood

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