Variant report

Variant	rs58824845
Chromosome Location	chr3:88018433-88018434
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10511135	0.88[EUR][1000 genomes]
rs11916422	0.88[EUR][1000 genomes]
rs11917302	0.88[EUR][1000 genomes]
rs12485247	0.88[EUR][1000 genomes]
rs12486342	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12486894	0.80[EUR][1000 genomes]
rs12495772	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12497021	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12497845	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17025172	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17025178	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17025185	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1844434	0.80[EUR][1000 genomes]
rs1847304	0.88[EUR][1000 genomes]
rs2068948	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2099228	0.80[EUR][1000 genomes]
rs2343774	0.84[EUR][1000 genomes]
rs2932275	0.80[EUR][1000 genomes]
rs2932302	0.80[EUR][1000 genomes]
rs55879630	0.88[EUR][1000 genomes]
rs57226509	0.84[EUR][1000 genomes]
rs58046740	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58496925	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58521812	0.84[EUR][1000 genomes]
rs59703125	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72913715	0.84[EUR][1000 genomes]
rs72913722	0.84[EUR][1000 genomes]
rs73847706	0.88[EUR][1000 genomes]
rs73847712	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73847723	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73847733	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73847735	0.86[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877146	chr3:87983962-88159835	Weak transcription ZNF genes & repeats Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:88012400-88023800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr3:88014200-88027000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:88014400-88020800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:88018400-88018600	Enhancers	Sigmoid Colon	Sigmoid Colon
5	chr3:88018400-88019200	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr3:88018400-88019400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:88018400-88020200	Enhancers	Fetal Intestine Large	intestine
8	chr3:88018400-88020200	Enhancers	Rectal Mucosa Donor 31	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links