Variant report

Variant	rs58825446
Chromosome Location	chr8:62675020-62675021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr8:62673250..62675121-chr8:63950408..63951936,2	K562	blood:
2	chr8:62653602..62655933-chr8:62675000..62677702,2	K562	blood:
3	chr8:62674722..62676651-chr8:62683722..62685414,2	K562	blood:
4	chr8:62618042..62628934-chr8:62666240..62683608,38	K562	blood:
5	chr8:62625526..62627428-chr8:62673582..62676409,2	MCF-7	breast:
6	chr8:62616378..62628548-chr8:62667442..62677691,25	K562	blood:
7	chr8:62650531..62652161-chr8:62673134..62675125,2	K562	blood:
8	chr8:62649158..62652161-chr8:62671715..62675125,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000198363	Chromatin interaction
ENSG00000264408	Chromatin interaction
ENSG00000137563	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12156078	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12156424	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16927847	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs16927866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2350583	0.85[EUR][1000 genomes]
rs4130092	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4295658	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73682360	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73682362	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024432	chr8:62086247-62898782	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
2	nsv932198	chr8:62336705-62914562	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	esv2761430	chr8:62517980-62873803	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv1015216	chr8:62517980-62873803	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:62671000-62675200	Flanking Active TSS	A549	lung
2	chr8:62672000-62676200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr8:62672000-62676600	Enhancers	NHDF-Ad	bronchial
4	chr8:62672800-62679400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr8:62673000-62677000	Enhancers	HepG2	liver
6	chr8:62673400-62676200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:62673600-62678400	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr8:62673600-62678400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:62673600-62678600	Weak transcription	Fetal Lung	lung
10	chr8:62673800-62677200	Enhancers	K562	blood
11	chr8:62674200-62678400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr8:62674200-62679200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:62674200-62679400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr8:62674400-62675200	Enhancers	Osteobl	bone
15	chr8:62674400-62681600	Enhancers	Hela-S3	cervix
16	chr8:62674600-62678400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr8:62674600-62679200	Weak transcription	NH-A	brain
18	chr8:62674800-62676800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr8:62675000-62675200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr8:62675000-62675200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr8:62675000-62675200	Enhancers	NHLF	lung
22	chr8:62675000-62675400	Enhancers	HMEC	breast
23	chr8:62675000-62675400	Enhancers	NHEK	skin
24	chr8:62675000-62676400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr8:62675000-62679000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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