Variant report

Variant	rs58832257
Chromosome Location	chr14:81612510-81612511
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1035947	1.00[EUR][1000 genomes]
rs60322898	1.00[EUR][1000 genomes]
rs61266735	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74065062	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81610600-81613400	Weak transcription	Thymus	Thymus
2	chr14:81610800-81613400	Weak transcription	Dnd41	blood
3	chr14:81610800-81630800	Weak transcription	Left Ventricle	heart
4	chr14:81611000-81613600	Weak transcription	Fetal Thymus	thymus
5	chr14:81611000-81615800	Enhancers	Liver	Liver
6	chr14:81612000-81615200	Weak transcription	Duodenum Mucosa	Duodenum
7	chr14:81612200-81613800	Weak transcription	Brain Germinal Matrix	brain
8	chr14:81612400-81612600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr14:81612400-81612600	Weak transcription	Stomach Mucosa	stomach
10	chr14:81612400-81614000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links