Variant report

Variant	rs588335
Chromosome Location	chr3:43074871-43074872
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:43068747..43070408-chr3:43073620..43075322,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs533777	1.00[YRI][hapmap]
rs549709	1.00[CEU][hapmap]
rs601384	1.00[CEU][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs834179	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460522	chr3:42967597-43175207	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv590149	chr3:42967597-43175207	Flanking Active TSS ZNF genes & repeats Enhancers Weak transcription Bivalent/Poised TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv432417	chr3:43045796-43098296	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:43059600-43084600	Weak transcription	Pancreas	Pancrea
2	chr3:43061000-43080200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:43063000-43077400	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:43063600-43084800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr3:43064000-43077800	Weak transcription	Brain Substantia Nigra	brain
6	chr3:43065400-43084400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:43067400-43076200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr3:43067600-43084000	Weak transcription	Aorta	Aorta
9	chr3:43068200-43076800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr3:43070600-43084800	Weak transcription	Esophagus	oesophagus
11	chr3:43072200-43076600	Weak transcription	Primary T cells fromperipheralblood	blood
12	chr3:43073400-43077200	Weak transcription	Stomach Mucosa	stomach
13	chr3:43073400-43077600	Weak transcription	Brain Cingulate Gyrus	brain
14	chr3:43073400-43077800	Weak transcription	Fetal Intestine Large	intestine
15	chr3:43073400-43084600	Weak transcription	Brain Angular Gyrus	brain
16	chr3:43073400-43084600	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr3:43073600-43075000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr3:43073600-43084400	Weak transcription	Adipose Nuclei	Adipose
19	chr3:43073800-43075200	Strong transcription	Ovary	ovary
20	chr3:43074000-43075400	Strong transcription	Liver	Liver
21	chr3:43074000-43076600	Weak transcription	Fetal Muscle Leg	muscle
22	chr3:43074000-43078400	Strong transcription	Placenta	Placenta
23	chr3:43074400-43076400	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:43074600-43075000	Enhancers	Lung	lung
25	chr3:43074600-43075400	Strong transcription	Fetal Stomach	stomach
26	chr3:43074600-43084200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr3:43074800-43076400	Weak transcription	Fetal Muscle Trunk	muscle
28	chr3:43074800-43081200	Weak transcription	Fetal Intestine Small	intestine

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