Variant report

Variant	rs58835058
Chromosome Location	chr8:19977240-19977241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs28475243	1.00[EUR][1000 genomes]
rs28552383	1.00[EUR][1000 genomes]
rs28621370	1.00[EUR][1000 genomes]
rs2898498	1.00[EUR][1000 genomes]
rs34062067	1.00[EUR][1000 genomes]
rs57127754	1.00[EUR][1000 genomes]
rs57435297	1.00[EUR][1000 genomes]
rs60237642	1.00[EUR][1000 genomes]
rs73669730	1.00[EUR][1000 genomes]
rs73669753	1.00[EUR][1000 genomes]
rs73669754	1.00[EUR][1000 genomes]
rs73669756	1.00[EUR][1000 genomes]
rs7834224	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv610759	chr8:19561997-20068842	Enhancers Strong transcription Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv890633	chr8:19875100-19985382	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1033931	chr8:19954428-19979303	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1015598	chr8:19963102-20088510	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	nsv539523	chr8:19963102-20088510	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
8	nsv8311	chr8:19975043-19980924	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv890634	chr8:19976239-20028474	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:19970000-19977400	Weak transcription	Right Atrium	heart
2	chr8:19971400-19977400	Weak transcription	Psoas Muscle	Psoas
3	chr8:19971600-19977800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr8:19972200-19977400	Weak transcription	Fetal Muscle Leg	muscle
5	chr8:19973200-19977400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr8:19974200-19979200	Enhancers	Placenta	Placenta
7	chr8:19975800-19980000	Weak transcription	NHEK	skin
8	chr8:19976200-19978400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr8:19976800-19977400	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
10	chr8:19976800-19977600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr8:19976800-19977600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr8:19976800-19977600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr8:19976800-19977600	Enhancers	Liver	Liver
14	chr8:19976800-19977600	Enhancers	Fetal Stomach	stomach
15	chr8:19976800-19977600	Bivalent Enhancer	Osteobl	bone
16	chr8:19976800-19978000	Enhancers	HUVEC	blood vessel
17	chr8:19976800-19978200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr8:19976800-19978200	Bivalent Enhancer	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr8:19976800-19978200	Enhancers	Adipose Nuclei	Adipose
20	chr8:19976800-19978200	Enhancers	Left Ventricle	heart
21	chr8:19976800-19978400	Enhancers	A549	lung
22	chr8:19976800-19978600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr8:19976800-19978600	Enhancers	NH-A	brain
24	chr8:19977000-19977400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr8:19977000-19977400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr8:19977000-19977600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr8:19977000-19978000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr8:19977000-19978000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr8:19977000-19978000	Enhancers	Colon Smooth Muscle	Colon
30	chr8:19977000-19978000	Weak transcription	Lung	lung
31	chr8:19977000-19978000	Enhancers	HSMM	muscle
32	chr8:19977000-19978200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr8:19977000-19978200	Enhancers	NHDF-Ad	bronchial
34	chr8:19977200-19977600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr8:19977200-19977600	Flanking Active TSS	Hela-S3	cervix
36	chr8:19977200-19977600	Enhancers	HMEC	breast
37	chr8:19977200-19978000	Enhancers	Fetal Lung	lung

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