Variant report

Variant	rs58837727
Chromosome Location	chr12:10527144-10527145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:10515701..10517485-chr12:10526352..10529351,3	K562	blood:
2	chr12:10520202..10521817-chr12:10526312..10528193,2	K562	blood:
3	chr12:10515701..10519228-chr12:10526352..10529377,4	K562	blood:

Variant related genes	Relation type
ENSG00000245648	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11832581	0.88[AFR][1000 genomes]
rs2061754	0.86[AMR][1000 genomes]
rs2061755	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3983615	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs56056709	0.86[AMR][1000 genomes]
rs57449593	0.86[AMR][1000 genomes]
rs73256263	0.88[AFR][1000 genomes]
rs73256265	0.88[AFR][1000 genomes]
rs73256280	0.88[AFR][1000 genomes]
rs73256283	0.88[AFR][1000 genomes]
rs73256286	0.88[AFR][1000 genomes]
rs73256289	0.87[AFR][1000 genomes]
rs73258205	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898757	chr12:10229281-10614641	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv832328	chr12:10398071-10620443	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
3	nsv898759	chr12:10454556-10583365	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv3432683	chr12:10470734-10527581	Genic enhancers Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
5	nsv898760	chr12:10492982-10564329	Genic enhancers Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv898761	chr12:10496724-10564329	Weak transcription Flanking Active TSS Bivalent Enhancer Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv1036390	chr12:10496724-10596720	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv557455	chr12:10508975-10560957	Flanking Active TSS Weak transcription Genic enhancers Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
9	nsv898762	chr12:10509383-10564329	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv898763	chr12:10514528-10603670	Genic enhancers Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10518400-10537000	Weak transcription	Left Ventricle	heart
2	chr12:10518800-10527400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:10519600-10534800	Weak transcription	Fetal Stomach	stomach
4	chr12:10519600-10547800	Weak transcription	Colon Smooth Muscle	Colon
5	chr12:10521200-10531000	Weak transcription	Placenta	Placenta
6	chr12:10521800-10534600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr12:10522400-10530200	Weak transcription	Fetal Thymus	thymus
8	chr12:10522400-10534000	Weak transcription	Thymus	Thymus
9	chr12:10523000-10536000	Weak transcription	Ovary	ovary
10	chr12:10523400-10527400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr12:10523600-10532000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
12	chr12:10524400-10528200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr12:10525000-10527200	Enhancers	Brain Substantia Nigra	brain
14	chr12:10525200-10527600	Enhancers	Brain Angular Gyrus	brain
15	chr12:10525400-10531200	Weak transcription	HMEC	breast
16	chr12:10525400-10547200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr12:10525600-10529800	Weak transcription	K562	blood
18	chr12:10525600-10531400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr12:10525600-10533200	Weak transcription	Fetal Intestine Large	intestine
20	chr12:10525600-10534600	Weak transcription	Pancreas	Pancrea
21	chr12:10525800-10527800	Weak transcription	Sigmoid Colon	Sigmoid Colon
22	chr12:10525800-10528200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr12:10525800-10528200	Weak transcription	Primary B cells from cord blood	blood
24	chr12:10525800-10528400	Weak transcription	Adipose Nuclei	Adipose
25	chr12:10525800-10528800	Enhancers	Primary T helper naive cells from peripheral blood	blood
26	chr12:10525800-10528800	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr12:10525800-10529200	Weak transcription	HUVEC	blood vessel
28	chr12:10525800-10529800	Weak transcription	Primary B cells from peripheral blood	blood
29	chr12:10525800-10531000	Strong transcription	Hela-S3	cervix
30	chr12:10525800-10531200	Weak transcription	NHEK	skin
31	chr12:10525800-10534400	Weak transcription	Spleen	Spleen
32	chr12:10526400-10527400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr12:10526400-10527400	Strong transcription	Fetal Intestine Small	intestine
34	chr12:10526600-10527200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr12:10526600-10527200	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr12:10526600-10527400	Enhancers	Osteobl	bone
37	chr12:10526600-10529800	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr12:10526800-10527400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr12:10526800-10527600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr12:10526800-10530200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr12:10527000-10527400	Strong transcription	Primary T cells from cord blood	blood
42	chr12:10527000-10527400	Genic enhancers	Primary T cells fromperipheralblood	blood
43	chr12:10527000-10527400	Enhancers	Brain Anterior Caudate	brain
44	chr12:10527000-10527600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr12:10527000-10527600	Enhancers	Brain Hippocampus Middle	brain

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