Variant report

Variant	rs58843921
Chromosome Location	chr4:152808677-152808678
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:152803724..152805338-chr4:152808624..152810923,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAM160A1-10	chr4:152808057-152810405	l_2755_chr4:152807157-152811090_testes

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs17028038	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17028044	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4282150	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4449394	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57864042	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6850149	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs715947	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72732142	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs900902	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432644	chr4:152635395-153023402	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
2	esv2757086	chr4:152776271-152809738	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv2759289	chr4:152776271-152809738	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv595731	chr4:152790580-152831309	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv432652	chr4:152791533-152818018	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1030328	chr4:152791533-152875666	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv1028836	chr4:152791680-152879097	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv10588	chr4:152807665-152809854	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:152803400-152809200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr4:152804000-152808800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr4:152804000-152809000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr4:152804200-152809400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr4:152806400-152809200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr4:152808000-152808800	Enhancers	HSMM	muscle
7	chr4:152808000-152810000	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr4:152808200-152809600	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr4:152808200-152809600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr4:152808200-152809600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
11	chr4:152808200-152809800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr4:152808200-152810200	Enhancers	Primary B cells from peripheral blood	blood
13	chr4:152808200-152810200	Flanking Active TSS	GM12878-XiMat	blood
14	chr4:152808400-152808800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:152808400-152809000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr4:152808400-152809000	Enhancers	Fetal Brain Male	brain
17	chr4:152808400-152809400	Enhancers	Dnd41	blood
18	chr4:152808400-152809800	Enhancers	Fetal Thymus	thymus
19	chr4:152808400-152810400	Enhancers	Primary B cells from cord blood	blood
20	chr4:152808600-152809400	Enhancers	NHEK	skin

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