Variant report

Variant	rs58855157
Chromosome Location	chr8:50393646-50393647
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs55710254	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55786963	1.00[AMR][1000 genomes]
rs56051620	1.00[AMR][1000 genomes]
rs56192524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57326579	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57519842	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58739325	1.00[AFR][1000 genomes]
rs59078589	1.00[AFR][1000 genomes]
rs59130402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60486347	1.00[AMR][1000 genomes]
rs61660606	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6651317	1.00[AMR][1000 genomes]
rs73675914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73675915	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73675916	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73675919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73677713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679505	0.89[AFR][1000 genomes]
rs73679518	1.00[AFR][1000 genomes]
rs73679524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679526	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679528	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679529	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679531	1.00[AMR][1000 genomes]
rs73679541	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679548	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679551	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679570	1.00[AMR][1000 genomes]
rs73679571	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679572	1.00[AMR][1000 genomes]
rs73679575	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679585	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679746	1.00[AMR][1000 genomes]
rs73679747	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679749	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679751	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73679753	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680243	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73680244	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034908	chr8:50023423-50416049	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv539601	chr8:50023423-50416049	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1024410	chr8:50037085-50511501	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv890857	chr8:50133485-50469764	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv917031	chr8:50207246-50709286	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv890858	chr8:50219675-50532935	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:50392400-50393800	Enhancers	Pancreatic Islets	Pancreatic Islet
2	chr8:50393600-50394400	Enhancers	Brain Germinal Matrix	brain

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