Variant report

Variant	rs58860189
Chromosome Location	chr11:102362820-102362821
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs17093605	1.00[AMR][1000 genomes]
rs17881365	1.00[AMR][1000 genomes]
rs57626061	1.00[AMR][1000 genomes]
rs60403740	1.00[AMR][1000 genomes]
rs6590965	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7111897	1.00[AMR][1000 genomes]
rs7121533	1.00[AMR][1000 genomes]
rs7125554	1.00[AMR][1000 genomes]
rs7926470	1.00[AMR][1000 genomes]
rs7926815	1.00[AMR][1000 genomes]
rs7933135	1.00[AMR][1000 genomes]
rs7940503	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1035567	chr11:102264516-102431607	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv469990	chr11:102335609-102413943	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv556150	chr11:102335609-102415859	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv468854	chr11:102336617-102413943	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv556151	chr11:102336617-102413943	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:102358400-102364200	Weak transcription	Fetal Intestine Small	intestine
2	chr11:102358400-102365600	Weak transcription	Primary T cells from cord blood	blood
3	chr11:102360400-102364000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:102360800-102363000	Weak transcription	GM12878-XiMat	blood
5	chr11:102361800-102364400	Enhancers	HepG2	liver
6	chr11:102362200-102363000	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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