Variant report

Variant	rs58860692
Chromosome Location	chr1:158007007-158007008
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:158005662..158007794-chr1:158010533..158013028,2	K562	blood:
2	chr1:157998908..158001801-chr1:158002681..158007266,4	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11264876	1.00[ASN][1000 genomes]
rs16839654	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16839658	1.00[ASN][1000 genomes]
rs5001215	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59961209	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6686246	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1823720	chr1:157978556-158034017	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:157989400-158007400	Weak transcription	Gastric	stomach
2	chr1:157991800-158007400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr1:157993000-158007400	Weak transcription	HSMMtube	muscle
4	chr1:157993000-158007600	Weak transcription	Esophagus	oesophagus
5	chr1:157993200-158007400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr1:157995000-158007800	Weak transcription	Brain Germinal Matrix	brain
7	chr1:157995400-158007600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:157995800-158007400	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr1:157996000-158007400	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr1:157996000-158007400	Weak transcription	Lung	lung
11	chr1:157996200-158007600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr1:157996200-158007600	Weak transcription	Spleen	Spleen
13	chr1:157996400-158007400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr1:157997600-158047600	Weak transcription	Dnd41	blood
15	chr1:157998000-158007400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr1:157998200-158007600	Weak transcription	Left Ventricle	heart
17	chr1:157999000-158013000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr1:158001200-158011800	Weak transcription	Fetal Intestine Large	intestine
19	chr1:158001200-158047400	Weak transcription	Thymus	Thymus
20	chr1:158001400-158007400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr1:158001400-158007400	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr1:158001400-158007400	Weak transcription	Aorta	Aorta
23	chr1:158001600-158007400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr1:158002400-158025400	Weak transcription	Fetal Brain Female	brain
25	chr1:158002600-158007400	Weak transcription	Fetal Muscle Leg	muscle
26	chr1:158004800-158007400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr1:158004800-158009400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr1:158005000-158007400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
29	chr1:158005000-158007400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr1:158005000-158009000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr1:158005000-158009400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr1:158005000-158009600	Enhancers	Ovary	ovary
33	chr1:158005000-158010000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr1:158005000-158010200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr1:158005200-158007800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr1:158005200-158008400	Genic enhancers	NHEK	skin
37	chr1:158005400-158007400	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr1:158005400-158009600	Enhancers	Adipose Nuclei	Adipose
39	chr1:158005600-158008200	Enhancers	A549	lung
40	chr1:158005800-158007400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr1:158005800-158007400	Weak transcription	Rectal Smooth Muscle	rectum
42	chr1:158005800-158009600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:158006000-158007200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr1:158006000-158007400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr1:158006000-158007400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr1:158006000-158008600	Genic enhancers	HSMM	muscle
47	chr1:158006200-158007400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr1:158006200-158007400	Weak transcription	NH-A	brain
49	chr1:158006200-158009200	Genic enhancers	Fetal Stomach	stomach
50	chr1:158006200-158009400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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