Variant report

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1489719	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16841920	0.82[EUR][1000 genomes]
rs16841958	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16841971	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17394276	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61255658	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73144468	0.88[ASN][1000 genomes]
rs73144470	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817478	chr3:99474086-99955548	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv916476	chr3:99478229-100124625	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv591148	chr3:99774720-99905803	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99899000-99907800	Weak transcription	Psoas Muscle	Psoas
2	chr3:99899000-99911000	Weak transcription	Aorta	Aorta
3	chr3:99902400-99905800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:99902800-99905000	Enhancers	Fetal Stomach	stomach
5	chr3:99903000-99905600	Enhancers	NHDF-Ad	bronchial
6	chr3:99903800-99905000	Enhancers	Primary hematopoietic stem cells short term culture	blood
7	chr3:99903800-99905600	Enhancers	NHLF	lung
8	chr3:99903800-99906000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr3:99904000-99905400	Enhancers	Placenta	Placenta
10	chr3:99904200-99905000	Enhancers	Left Ventricle	heart
11	chr3:99904200-99905000	Enhancers	Right Atrium	heart
12	chr3:99904200-99905000	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr3:99904200-99905000	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr3:99904200-99905000	Enhancers	Spleen	Spleen
15	chr3:99904200-99905600	Enhancers	Fetal Muscle Leg	muscle
16	chr3:99904200-99905600	Enhancers	Ovary	ovary
17	chr3:99904600-99905000	Enhancers	Right Ventricle	heart
18	chr3:99904600-99905400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr3:99904600-99905800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr3:99904800-99905600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr3:99904800-99905600	Enhancers	HepG2	liver

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