Variant report

Variant	rs58864502
Chromosome Location	chr3:150856244-150856245
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:150846331..150848398-chr3:150853442..150856842,3	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs56155270	1.00[AMR][1000 genomes]
rs56863103	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57678097	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57900694	0.93[AFR][1000 genomes]
rs58092658	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58615496	1.00[AMR][1000 genomes]
rs60532249	0.91[AFR][1000 genomes]
rs60932660	0.91[AFR][1000 genomes]
rs61182389	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012983	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73012996	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73014809	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73016713	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915879	chr3:150607390-150860207	Weak transcription Flanking Active TSS Bivalent/Poised TSS Active TSS Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv829756	chr3:150692636-150889738	Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv460894	chr3:150770614-151095093	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv592045	chr3:150770614-151095093	Flanking Active TSS Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	esv2757897	chr3:150791625-150957485	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	esv2759188	chr3:150791625-150957485	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv877648	chr3:150792444-150895145	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150826400-150863600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr3:150827400-150873000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:150830400-150863000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:150831200-150863000	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:150844800-150863600	Weak transcription	Brain Angular Gyrus	brain
6	chr3:150844800-150863600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr3:150846200-150862400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr3:150846400-150863600	Weak transcription	Brain Anterior Caudate	brain
9	chr3:150846800-150862600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr3:150848400-150861000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr3:150852800-150860800	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr3:150854600-150861200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr3:150854800-150861400	Weak transcription	Fetal Thymus	thymus
14	chr3:150855200-150857000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
15	chr3:150855400-150856400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr3:150855400-150856400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr3:150855400-150861200	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr3:150855400-150861200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr3:150855400-150863000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr3:150856000-150857000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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