Variant report

Variant	rs58867077
Chromosome Location	chr4:8246101-8246102
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:8243949..8246187-chr4:8473186..8476131,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000155275	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57499094	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57688695	1.00[AMR][1000 genomes]
rs57786617	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010809	chr4:8097627-8292324	Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1002794	chr4:8110083-8490934	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv461216	chr4:8154534-8276411	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv593626	chr4:8154534-8276411	Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv878594	chr4:8154534-8286916	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
6	nsv878595	chr4:8154534-8390646	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
7	nsv878596	chr4:8171401-8254784	Genic enhancers Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
8	nsv878597	chr4:8171401-8294196	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv829853	chr4:8172065-8320868	Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
10	nsv878598	chr4:8195705-8254784	Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
11	nsv878599	chr4:8195705-8293398	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
12	esv2763338	chr4:8199091-8260812	Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
13	nsv593627	chr4:8202211-8311043	Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
14	nsv878600	chr4:8209447-8312158	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA target site	13 gene(s)	inside rSNPs	diseases
15	nsv878601	chr4:8214767-8440951	Flanking Active TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
16	nsv878602	chr4:8214767-8448992	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
17	nsv1009011	chr4:8225669-8424831	Weak transcription Enhancers Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8240800-8246400	Genic enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr4:8240800-8254400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:8241200-8247600	Weak transcription	Dnd41	blood
4	chr4:8241400-8246200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr4:8241400-8254200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:8242400-8246200	Weak transcription	Primary B cells from cord blood	blood
7	chr4:8243400-8247800	Weak transcription	Gastric	stomach
8	chr4:8243400-8249400	Weak transcription	Esophagus	oesophagus
9	chr4:8243600-8249200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:8243800-8247800	Weak transcription	Liver	Liver
11	chr4:8244000-8246800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr4:8244400-8248400	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:8244600-8246200	Strong transcription	Fetal Thymus	thymus
14	chr4:8244600-8247200	Weak transcription	Primary B cells from peripheral blood	blood
15	chr4:8244600-8247600	Weak transcription	Lung	lung
16	chr4:8244600-8248000	Weak transcription	Spleen	Spleen
17	chr4:8244600-8248400	Weak transcription	Stomach Mucosa	stomach
18	chr4:8244600-8248600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:8244600-8248600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:8244600-8248600	Weak transcription	Right Ventricle	heart
21	chr4:8244600-8248800	Weak transcription	Colonic Mucosa	Colon
22	chr4:8244800-8246200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:8244800-8246200	Strong transcription	Fetal Intestine Small	intestine
24	chr4:8244800-8246400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr4:8244800-8246400	Strong transcription	Thymus	Thymus
26	chr4:8244800-8247800	Weak transcription	Adipose Nuclei	Adipose
27	chr4:8244800-8248000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr4:8244800-8248000	Weak transcription	Right Atrium	heart
29	chr4:8244800-8248200	Weak transcription	Left Ventricle	heart
30	chr4:8244800-8248400	Weak transcription	NHEK	skin
31	chr4:8244800-8248600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr4:8244800-8248600	Weak transcription	A549	lung
33	chr4:8244800-8248600	Weak transcription	NHDF-Ad	bronchial
34	chr4:8244800-8249000	Weak transcription	Fetal Intestine Large	intestine
35	chr4:8245000-8246200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr4:8245000-8246200	Weak transcription	Fetal Stomach	stomach
37	chr4:8245000-8246800	Weak transcription	Monocytes-CD14+_RO01746	blood
38	chr4:8245000-8247400	Weak transcription	GM12878-XiMat	blood
39	chr4:8245000-8248400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr4:8245000-8248600	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr4:8245000-8248600	Weak transcription	Skeletal Muscle Male	skeletal muscle
42	chr4:8245000-8248600	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr4:8245000-8249800	Weak transcription	HUVEC	blood vessel
44	chr4:8245000-8255800	Weak transcription	HMEC	breast
45	chr4:8245200-8248600	Weak transcription	Fetal Lung	lung
46	chr4:8245200-8255200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr4:8245800-8247000	Bivalent Enhancer	Fetal Muscle Trunk	muscle

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