Variant report

Variant	rs58868873
Chromosome Location	chr11:86543609-86543610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs57577143	0.82[AFR][1000 genomes]
rs59435481	0.82[AFR][1000 genomes]
rs60141566	0.90[AFR][1000 genomes]
rs7107277	0.82[AFR][1000 genomes]
rs7121796	0.82[AFR][1000 genomes]
rs7129435	1.00[AFR][1000 genomes]
rs73512430	0.82[AFR][1000 genomes]
rs73520789	1.00[AFR][1000 genomes]
rs9736915	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv975959	chr11:86534725-86568919	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	esv1836220	chr11:86542005-86573310	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86520000-86549200	Weak transcription	Ovary	ovary
2	chr11:86521000-86551400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr11:86522800-86544400	Weak transcription	Fetal Kidney	kidney
4	chr11:86528800-86545400	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr11:86530200-86549000	Weak transcription	Duodenum Smooth Muscle	Duodenum
6	chr11:86530200-86549000	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr11:86530200-86549000	Weak transcription	HMEC	breast
8	chr11:86530200-86550800	Weak transcription	HUVEC	blood vessel
9	chr11:86530400-86548600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:86530400-86549200	Weak transcription	Aorta	Aorta
11	chr11:86530400-86551000	Weak transcription	A549	lung
12	chr11:86530400-86551400	Weak transcription	Osteobl	bone
13	chr11:86531000-86549400	Weak transcription	Colon Smooth Muscle	Colon
14	chr11:86533000-86548600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr11:86534600-86549200	Weak transcription	Fetal Stomach	stomach
16	chr11:86534800-86550800	Weak transcription	HSMM	muscle
17	chr11:86537200-86580600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr11:86541400-86544400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:86541400-86544800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr11:86541600-86544600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:86541800-86544400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:86541800-86544600	Strong transcription	Stomach Smooth Muscle	stomach
23	chr11:86541800-86548600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:86542000-86544400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:86542000-86545000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr11:86542200-86545000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr11:86542200-86547800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr11:86542800-86555400	Weak transcription	Fetal Lung	lung
29	chr11:86543200-86582600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:86543600-86544200	Strong transcription	Adipose Nuclei	Adipose

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