Variant report

Variant	rs58880884
Chromosome Location	chr6:118310709-118310710
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs59490938	0.87[AFR][1000 genomes]
rs60811551	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530526	chr6:118027339-118718476	Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:118305600-118315400	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:118308200-118311400	Weak transcription	Brain Angular Gyrus	brain
3	chr6:118308400-118314200	Weak transcription	Fetal Brain Female	brain
4	chr6:118308600-118311400	Weak transcription	Fetal Brain Male	brain
5	chr6:118309200-118315200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr6:118309800-118312200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:118309800-118312200	Enhancers	Brain Substantia Nigra	brain
8	chr6:118310000-118312000	Enhancers	Brain Inferior Temporal Lobe	brain
9	chr6:118310000-118312800	Enhancers	Brain Cingulate Gyrus	brain
10	chr6:118310000-118315200	Enhancers	Brain Hippocampus Middle	brain
11	chr6:118310200-118310800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr6:118310200-118312000	Enhancers	Brain Germinal Matrix	brain
13	chr6:118310400-118310800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:118310600-118313600	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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