Variant report

Variant	rs58890735
Chromosome Location	chr2:151182027-151182028
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11889687	1.00[ASN][1000 genomes]
rs12105111	1.00[ASN][1000 genomes]
rs16828076	0.96[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs16828078	0.89[ASN][1000 genomes]
rs2334317	0.89[ASN][1000 genomes]
rs57225491	0.89[ASN][1000 genomes]
rs59094767	0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs72989946	0.92[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs72989950	0.91[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs72989951	0.89[ASN][1000 genomes]
rs72989953	0.89[ASN][1000 genomes]
rs73004276	1.00[AMR][1000 genomes]
rs73004285	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv532473	chr2:151164210-151701860	Flanking Active TSS Enhancers Genic enhancers Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151177600-151184200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:151178600-151184000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr2:151179400-151182400	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr2:151181400-151183000	Enhancers	A549	lung
5	chr2:151181400-151183400	Enhancers	Brain Germinal Matrix	brain
6	chr2:151181400-151185200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr2:151181600-151182200	Enhancers	Stomach Mucosa	stomach
8	chr2:151181600-151184000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr2:151181800-151183600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr2:151182000-151182800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr2:151182000-151183800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr2:151182000-151185600	Enhancers	Fetal Brain Male	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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