Variant report

Variant	rs58899905
Chromosome Location	chr7:137657422-137657423
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:137650743..137652751-chr7:137656187..137658700,3	K562	blood:
2	chr7:137655309..137658058-chr7:137684090..137686096,2	MCF-7	breast:
3	chr7:137657308..137659829-chr7:137667602..137669726,2	K562	blood:
4	chr7:137655112..137658025-chr7:137666143..137668464,2	MCF-7	breast:
5	chr7:137632387..137635016-chr7:137657299..137659566,2	MCF-7	breast:
6	chr7:137644287..137647017-chr7:137655823..137657614,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10275270	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12534066	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs274006	0.95[ASN][1000 genomes]
rs274007	0.95[ASN][1000 genomes]
rs274011	0.98[ASN][1000 genomes]
rs274013	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs274014	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518070	chr7:137534627-137808839	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:137635200-137663400	Weak transcription	Primary B cells from cord blood	blood
2	chr7:137646600-137657600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr7:137649800-137658000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr7:137650200-137660200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr7:137651400-137675200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr7:137652000-137657600	Weak transcription	Small Intestine	intestine
7	chr7:137652200-137672200	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr7:137652600-137659400	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr7:137652600-137672600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr7:137652800-137658000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr7:137652800-137658200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr7:137652800-137658200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr7:137652800-137658200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr7:137652800-137658600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr7:137652800-137659400	Weak transcription	Esophagus	oesophagus
16	chr7:137652800-137660200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr7:137652800-137660200	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr7:137652800-137662800	Weak transcription	Stomach Mucosa	stomach
19	chr7:137652800-137663000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr7:137652800-137663200	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr7:137652800-137663200	Weak transcription	Spleen	Spleen
22	chr7:137652800-137669800	Weak transcription	H9 Cell Line	embryonic stem cell
23	chr7:137652800-137670000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr7:137652800-137674400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr7:137652800-137674800	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr7:137652800-137677600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
27	chr7:137653400-137659400	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr7:137653400-137661000	Weak transcription	Pancreas	Pancrea
29	chr7:137653600-137658000	Weak transcription	Lung	lung
30	chr7:137653600-137659400	Weak transcription	Aorta	Aorta
31	chr7:137653600-137659800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr7:137653800-137660400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr7:137654000-137657600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr7:137654000-137674200	Weak transcription	NHEK	skin
35	chr7:137654200-137658000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr7:137654400-137659400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr7:137654600-137658000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr7:137655600-137658000	Weak transcription	Brain Cingulate Gyrus	brain
39	chr7:137655600-137658000	Weak transcription	Ovary	ovary
40	chr7:137655600-137659400	Weak transcription	Left Ventricle	heart
41	chr7:137655600-137659400	Strong transcription	GM12878-XiMat	blood
42	chr7:137655600-137660000	Weak transcription	Fetal Intestine Large	intestine
43	chr7:137655600-137660800	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr7:137655600-137663200	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr7:137655600-137665800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr7:137655600-137667000	Weak transcription	Primary hematopoietic stem cells	blood
47	chr7:137655800-137657600	Weak transcription	Brain Substantia Nigra	brain
48	chr7:137655800-137657600	Weak transcription	Psoas Muscle	Psoas
49	chr7:137655800-137658000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr7:137655800-137658000	Weak transcription	Brain Anterior Caudate	brain

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