Variant report

Variant	rs58902217
Chromosome Location	chr6:45869021-45869022
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56835402	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58016389	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532024	chr6:45475088-45982640	Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:45863400-45869600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:45865000-45870000	Weak transcription	Duodenum Mucosa	Duodenum
3	chr6:45865200-45870000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr6:45865200-45870000	Weak transcription	HSMMtube	muscle
5	chr6:45865400-45870000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr6:45866200-45871000	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr6:45866400-45880000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr6:45866600-45870000	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr6:45866600-45898400	Weak transcription	Colonic Mucosa	Colon
10	chr6:45866800-45869200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:45867000-45869200	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr6:45867000-45869200	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr6:45867000-45869400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:45867000-45869800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr6:45867000-45869800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr6:45867000-45871200	Strong transcription	Fetal Intestine Small	intestine
17	chr6:45867200-45870200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
18	chr6:45867400-45870000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:45867400-45870400	Genic enhancers	Left Ventricle	heart
20	chr6:45867600-45869800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
21	chr6:45867600-45870200	Weak transcription	Placenta	Placenta
22	chr6:45867800-45869200	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr6:45867800-45870000	Weak transcription	Brain Germinal Matrix	brain
24	chr6:45867800-45870600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:45867800-45871000	Strong transcription	Fetal Intestine Large	intestine
26	chr6:45867800-45884200	Weak transcription	Fetal Heart	heart
27	chr6:45868200-45870000	Enhancers	H1 Cell Line	embryonic stem cell
28	chr6:45868200-45870000	Weak transcription	Lung	lung
29	chr6:45868400-45869200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr6:45868400-45869200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr6:45868400-45869200	Enhancers	NHDF-Ad	bronchial
32	chr6:45868400-45869400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr6:45868400-45869400	Enhancers	Osteobl	bone
34	chr6:45868600-45869400	Enhancers	HUES48 Cell Line	embryonic stem cell
35	chr6:45868600-45869400	Enhancers	Right Atrium	heart
36	chr6:45868600-45869800	Enhancers	H9 Cell Line	embryonic stem cell
37	chr6:45868600-45870000	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr6:45868600-45870400	Enhancers	Breast Myoepithelial Primary Cells	Breast
39	chr6:45868600-45870800	Enhancers	Fetal Muscle Leg	muscle
40	chr6:45868600-45871200	Enhancers	Psoas Muscle	Psoas
41	chr6:45868800-45869200	Enhancers	Fetal Stomach	stomach
42	chr6:45868800-45870000	Enhancers	HSMM	muscle
43	chr6:45868800-45889600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr6:45869000-45869600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr6:45869000-45870400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr6:45869000-45870400	Genic enhancers	Right Ventricle	heart
47	chr6:45869000-45871000	Enhancers	Skeletal Muscle Female	skeletal muscle
48	chr6:45869000-45879600	Weak transcription	Adipose Nuclei	Adipose

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