Variant report

Variant	rs58903469
Chromosome Location	chr3:140937223-140937224
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11712552	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs16851151	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2012610	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2292400	0.82[ASN][1000 genomes]
rs2292401	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2292402	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56273864	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6439982	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439983	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6439986	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6439987	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7636976	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs58903469	ACPL2	cis	Whole Blood	GTEx

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140931800-140941200	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr3:140934400-140938400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr3:140935800-140937800	Enhancers	Fetal Intestine Large	intestine
4	chr3:140935800-140938800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr3:140936000-140937400	Enhancers	Psoas Muscle	Psoas
6	chr3:140936000-140937600	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr3:140936000-140937800	Enhancers	Primary B cells from cord blood	blood
8	chr3:140936200-140937800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
9	chr3:140936400-140937600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr3:140936400-140940000	Enhancers	Fetal Heart	heart
11	chr3:140936800-140937400	Weak transcription	Left Ventricle	heart
12	chr3:140937200-140937400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr3:140937200-140940600	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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