Variant report

Variant	rs58905817
Chromosome Location	chr11:104428135-104428136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10502035	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10732878	0.80[EUR][1000 genomes]
rs10736642	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10750707	0.80[EUR][1000 genomes]
rs10750708	0.80[EUR][1000 genomes]
rs10791706	0.80[EUR][1000 genomes]
rs10791712	0.80[EUR][1000 genomes]
rs10791713	0.80[EUR][1000 genomes]
rs10791714	0.80[EUR][1000 genomes]
rs10791715	0.80[EUR][1000 genomes]
rs10791716	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10895694	0.80[EUR][1000 genomes]
rs10895695	0.80[EUR][1000 genomes]
rs10895697	0.80[EUR][1000 genomes]
rs10895701	0.80[EUR][1000 genomes]
rs11226381	0.82[EUR][1000 genomes]
rs11226383	0.80[EUR][1000 genomes]
rs11226386	0.80[EUR][1000 genomes]
rs11226387	0.80[EUR][1000 genomes]
rs11226392	0.80[EUR][1000 genomes]
rs11226400	0.80[EUR][1000 genomes]
rs11226401	0.80[EUR][1000 genomes]
rs11226402	0.80[EUR][1000 genomes]
rs11226403	0.80[EUR][1000 genomes]
rs11226404	0.80[EUR][1000 genomes]
rs11226406	0.80[EUR][1000 genomes]
rs11226407	0.80[EUR][1000 genomes]
rs11226409	0.80[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11226410	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11226412	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11226413	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11226415	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11226416	0.83[EUR][1000 genomes]
rs12574112	0.80[EUR][1000 genomes]
rs1386663	0.80[EUR][1000 genomes]
rs1471922	0.80[EUR][1000 genomes]
rs1487681	0.80[EUR][1000 genomes]
rs1487683	0.80[EUR][1000 genomes]
rs1487692	0.80[EUR][1000 genomes]
rs1487694	0.80[EUR][1000 genomes]
rs1487700	0.80[EUR][1000 genomes]
rs1487701	0.80[EUR][1000 genomes]
rs1487702	0.80[EUR][1000 genomes]
rs1487703	0.80[EUR][1000 genomes]
rs1487704	0.80[EUR][1000 genomes]
rs1487715	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1565127	0.80[EUR][1000 genomes]
rs1565128	0.80[EUR][1000 genomes]
rs1565130	0.80[EUR][1000 genomes]
rs1565131	0.80[EUR][1000 genomes]
rs1565132	0.80[EUR][1000 genomes]
rs1565133	0.80[EUR][1000 genomes]
rs17102639	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17346834	0.80[EUR][1000 genomes]
rs17432191	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1825823	0.80[EUR][1000 genomes]
rs1843942	0.80[EUR][1000 genomes]
rs1872884	0.80[EUR][1000 genomes]
rs1906306	0.80[EUR][1000 genomes]
rs1948114	0.81[ASN][1000 genomes]
rs2046652	0.80[EUR][1000 genomes]
rs2101423	0.80[EUR][1000 genomes]
rs2220349	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2408942	0.80[EUR][1000 genomes]
rs3926217	0.80[EUR][1000 genomes]
rs4755042	0.80[EUR][1000 genomes]
rs4755043	0.80[EUR][1000 genomes]
rs56352719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57215502	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59704083	0.80[EUR][1000 genomes]
rs6421634	0.80[EUR][1000 genomes]
rs7103622	0.87[AFR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7106517	0.80[EUR][1000 genomes]
rs7107930	0.83[EUR][1000 genomes]
rs7119011	0.80[EUR][1000 genomes]
rs7119308	0.80[EUR][1000 genomes]
rs7120253	0.80[EUR][1000 genomes]
rs7121679	0.80[EUR][1000 genomes]
rs7122709	0.80[EUR][1000 genomes]
rs7926080	0.80[EUR][1000 genomes]
rs7926936	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7930608	0.80[EUR][1000 genomes]
rs7943503	0.80[EUR][1000 genomes]
rs931375	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043976	chr11:103881236-104526403	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1040367	chr11:103956747-104440470	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1044271	chr11:104136156-104666252	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1046098	chr11:104207210-105003661	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv898352	chr11:104274535-104452042	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv898353	chr11:104274535-104497607	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv428579	chr11:104298339-104459797	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv1054278	chr11:104317164-104562129	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1053886	chr11:104328822-104562129	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv1037091	chr11:104330237-104559477	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv556216	chr11:104333651-104560789	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
12	nsv1048500	chr11:104348766-104548809	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	nsv1054456	chr11:104358924-104805251	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv531430	chr11:104380924-105194452	Genic enhancers Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
15	nsv832254	chr11:104412769-104607277	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:104424600-104436000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:104427200-104428200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr11:104427200-104428600	Enhancers	Dnd41	blood
4	chr11:104427600-104428400	Enhancers	Breast Myoepithelial Primary Cells	Breast
5	chr11:104427800-104428200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr11:104427800-104428400	Enhancers	Placenta	Placenta

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