Variant report

Variant	rs58908468
Chromosome Location	chr13:53741931-53741932
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs74086436	1.00[AFR][1000 genomes]
rs74086460	1.00[AFR][1000 genomes]
rs74090338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1050969	chr13:53665927-54064861	Bivalent Enhancer Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53739800-53743800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr13:53740400-53745000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr13:53741000-53743400	Enhancers	Placenta Amnion	Placenta Amnion
4	chr13:53741600-53742200	Enhancers	Ovary	ovary
5	chr13:53741600-53743200	Enhancers	Brain Germinal Matrix	brain
6	chr13:53741800-53742000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr13:53741800-53742000	Bivalent Enhancer	Fetal Stomach	stomach
8	chr13:53741800-53742200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr13:53741800-53742200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr13:53741800-53742200	Enhancers	Fetal Brain Male	brain
11	chr13:53741800-53742200	Enhancers	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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