Variant report

Variant	rs58911222
Chromosome Location	chr3:142399709-142399710
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:142305364..142306466-chr3:142399184..142400223,7	MCF-7	breast:
2	chr3:142305398..142306280-chr3:142399277..142399935,3	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs59784693	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932989	chr3:142204208-142423305	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:142366000-142435400	Weak transcription	Colonic Mucosa	Colon
2	chr3:142369400-142408400	Weak transcription	Pancreas	Pancrea
3	chr3:142379200-142413000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:142382600-142400400	Weak transcription	Gastric	stomach
5	chr3:142384400-142411400	Weak transcription	HUES64 Cell Line	embryonic stem cell
6	chr3:142384800-142403000	Weak transcription	Liver	Liver
7	chr3:142385800-142415400	Weak transcription	A549	lung
8	chr3:142386400-142411800	Weak transcription	NHEK	skin
9	chr3:142387400-142401800	Weak transcription	Aorta	Aorta
10	chr3:142387400-142404200	Weak transcription	Small Intestine	intestine
11	chr3:142387400-142413400	Weak transcription	Stomach Mucosa	stomach
12	chr3:142389200-142412400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr3:142389200-142414800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr3:142389400-142408800	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr3:142389400-142410000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr3:142389800-142442400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr3:142390000-142406200	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr3:142392400-142404200	Weak transcription	Fetal Intestine Large	intestine
19	chr3:142392600-142410200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
20	chr3:142392800-142418000	Weak transcription	HepG2	liver
21	chr3:142392800-142425400	Weak transcription	Dnd41	blood
22	chr3:142392800-142433000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr3:142393000-142400200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr3:142393000-142407000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:142393000-142426000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr3:142393200-142400200	Weak transcription	Duodenum Mucosa	Duodenum
27	chr3:142393400-142426200	Weak transcription	Primary hematopoietic stem cells	blood
28	chr3:142396800-142402000	Weak transcription	Fetal Intestine Small	intestine
29	chr3:142398800-142401600	Strong transcription	Rectal Mucosa Donor 31	rectum
30	chr3:142399400-142407200	Weak transcription	Esophagus	oesophagus

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