Variant report

Variant	rs58914728
Chromosome Location	chr2:113908336-113908337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11884780	1.00[AMR][1000 genomes]
rs28947180	1.00[AMR][1000 genomes]
rs34338955	1.00[AMR][1000 genomes]
rs35556131	1.00[AMR][1000 genomes]
rs4251992	1.00[AMR][1000 genomes]
rs4252004	1.00[AMR][1000 genomes]
rs4252032	1.00[AMR][1000 genomes]
rs4252034	1.00[AMR][1000 genomes]
rs45447491	1.00[AMR][1000 genomes]
rs45490293	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997348	chr2:113688093-113986508	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
2	nsv582711	chr2:113895516-113984503	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:113908000-113909400	Weak transcription	Primary B cells from cord blood	blood
2	chr2:113908000-113913400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr2:113908000-113913400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr2:113908200-113908600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr2:113908200-113909600	Weak transcription	Primary B cells from peripheral blood	blood
6	chr2:113908200-113913400	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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