Variant report

Variant	rs58918741
Chromosome Location	chr8:61573626-61573627
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:61571219..61575228-chr8:61591571..61593615,3	MCF-7	breast:
2	chr8:61573400..61576268-chr8:61584203..61586295,2	MCF-7	breast:
3	chr8:61562433..61567496-chr8:61571905..61575539,5	K562	blood:
4	chr8:61562616..61568326-chr8:61569044..61575643,11	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHD7-1	chr8:61573379-61573743	ENSG00000255289

Variant related genes	Relation type
ENSG00000171316	Chromatin interaction
ENSG00000254869	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs56090478	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56274310	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
2	nsv530383	chr8:61431756-61605551	Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv831335	chr8:61497540-61688992	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
4	nsv890945	chr8:61522008-61707725	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
5	nsv824657	chr8:61555227-61626758	Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
6	nsv824658	chr8:61561488-61612108	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
7	nsv1027929	chr8:61569620-61617812	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:61573000-61573800	Bivalent Enhancer	Fetal Thymus	thymus
2	chr8:61573200-61573800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
3	chr8:61573200-61573800	Enhancers	Primary B cells from peripheral blood	blood
4	chr8:61573200-61573800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr8:61573200-61573800	Enhancers	Primary T helper naive cells from peripheral blood	blood
6	chr8:61573200-61573800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
7	chr8:61573200-61573800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr8:61573200-61574000	Bivalent Enhancer	Primary T cells from cord blood	blood
9	chr8:61573400-61573800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr8:61573400-61573800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr8:61573400-61575000	Enhancers	GM12878-XiMat	blood
12	chr8:61573600-61573800	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
13	chr8:61573600-61573800	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr8:61573600-61573800	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
15	chr8:61573600-61573800	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
16	chr8:61573600-61573800	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr8:61573600-61573800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr8:61573600-61573800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr8:61573600-61573800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
20	chr8:61573600-61573800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr8:61573600-61573800	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr8:61573600-61573800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin

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