Variant report

Variant	rs58922071
Chromosome Location	chr2:179084293-179084294
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:179073555..179076011-chr2:179081432..179084304,2	K562	blood:
2	chr2:179076705..179078596-chr2:179080919..179084346,3	K562	blood:
3	chr2:179084247..179086331-chr2:179102848..179105496,2	K562	blood:
4	chr2:179082696..179084962-chr2:179087856..179090236,2	MCF-7	breast:

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs17695665	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55923346	0.85[EUR][1000 genomes]
rs55937235	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60829693	0.87[ASN][1000 genomes]
rs62177188	0.87[ASN][1000 genomes]
rs62177210	0.87[ASN][1000 genomes]
rs62177215	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177216	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177223	0.85[EUR][1000 genomes]
rs62177224	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62177225	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009312	chr2:178924318-179215566	Weak transcription Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv536057	chr2:178924318-179215566	Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv875452	chr2:178963445-179167766	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:179076600-179087600	Weak transcription	Fetal Muscle Leg	muscle
2	chr2:179076600-179088000	Weak transcription	Brain Cingulate Gyrus	brain
3	chr2:179077200-179088200	Weak transcription	Brain Anterior Caudate	brain
4	chr2:179077200-179089600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:179078600-179086200	Weak transcription	HMEC	breast
6	chr2:179078600-179091800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr2:179078800-179088400	Weak transcription	Brain Angular Gyrus	brain
8	chr2:179079000-179088200	Weak transcription	Fetal Brain Female	brain
9	chr2:179079000-179101200	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr2:179081600-179085400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr2:179082800-179086000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr2:179083800-179085800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr2:179084000-179084400	Bivalent Enhancer	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr2:179084000-179085600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
15	chr2:179084000-179086800	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr2:179084200-179084400	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
17	chr2:179084200-179084400	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
18	chr2:179084200-179084400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr2:179084200-179084400	Enhancers	Psoas Muscle	Psoas
20	chr2:179084200-179084600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr2:179084200-179084600	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
22	chr2:179084200-179084600	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
23	chr2:179084200-179084600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
24	chr2:179084200-179084800	Enhancers	Skeletal Muscle Male	skeletal muscle
25	chr2:179084200-179085600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell

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