Variant report

Variant	rs589295
Chromosome Location	chr11:73672187-73672188
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10793068	0.92[ASN][1000 genomes]
rs10793069	0.92[ASN][1000 genomes]
rs1095399	0.82[EUR][1000 genomes]
rs11235960	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs612914	0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs634771	0.88[ASN][1000 genomes]
rs653263	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492091	chr11:73285970-73844424	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
2	nsv1038105	chr11:73552023-73673836	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
3	esv1827060	chr11:73670645-73694754	Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs589295	PAAF1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73641400-73672200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr11:73667600-73672200	Weak transcription	HSMM	muscle
3	chr11:73668800-73672400	Weak transcription	Osteobl	bone
4	chr11:73669000-73685800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:73669400-73672400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr11:73669800-73675200	Weak transcription	K562	blood
7	chr11:73669800-73681000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr11:73670600-73672400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr11:73670800-73672200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:73671000-73675200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:73672000-73672600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr11:73672000-73672800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr11:73672000-73672800	Enhancers	HSMMtube	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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