Variant report
| Variant | rs58929916 |
|---|---|
| Chromosome Location | chr3:51913953-51913954 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:2)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:2 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOS | chr3:51913952-51914320 | MCF10A-Er-Src | breast: | n/a | n/a |
| 2 | FOS | chr3:51913937-51914312 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| IQCF5 | TF binding region |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs1857800 | 0.91[ASN][1000 genomes] |
| rs1983106 | 0.91[ASN][1000 genomes] |
| rs2007607 | 0.91[ASN][1000 genomes] |
| rs2089224 | 0.84[AFR][1000 genomes];0.91[ASN][1000 genomes] |
| rs28451928 | 0.82[ASN][1000 genomes] |
| rs55804132 | 0.82[ASN][1000 genomes] |
| rs55886133 | 0.82[ASN][1000 genomes] |
| rs55894445 | 0.82[ASN][1000 genomes] |
| rs56222927 | 0.91[ASN][1000 genomes] |
| rs56285190 | 0.82[ASN][1000 genomes] |
| rs56662100 | 0.91[ASN][1000 genomes] |
| rs56998832 | 0.82[ASN][1000 genomes] |
| rs57184058 | 0.91[ASN][1000 genomes] |
| rs57269235 | 0.82[ASN][1000 genomes] |
| rs57407585 | 0.91[ASN][1000 genomes] |
| rs58800810 | 1.00[ASN][1000 genomes] |
| rs59215394 | 0.82[ASN][1000 genomes] |
| rs59857460 | 0.80[ASN][1000 genomes] |
| rs60818362 | 0.82[ASN][1000 genomes] |
| rs61015325 | 0.91[ASN][1000 genomes] |
| rs61257131 | 0.82[ASN][1000 genomes] |
| rs6763197 | 0.82[ASN][1000 genomes] |
| rs6782139 | 0.82[ASN][1000 genomes] |
| rs6795223 | 0.82[ASN][1000 genomes] |
| rs6795953 | 0.82[ASN][1000 genomes] |
| rs6798914 | 0.82[ASN][1000 genomes] |
| rs73834763 | 0.82[ASN][1000 genomes] |
| rs73834764 | 0.82[ASN][1000 genomes] |
| rs73834765 | 0.82[ASN][1000 genomes] |
| rs73834766 | 0.82[ASN][1000 genomes] |
| rs73838710 | 0.91[ASN][1000 genomes] |
| rs73838711 | 0.91[ASN][1000 genomes] |
| rs73838905 | 0.95[ASN][1000 genomes] |
| rs7627992 | 0.91[ASN][1000 genomes] |
| rs7644969 | 0.91[ASN][1000 genomes] |
| rs986539 | 0.91[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv520211 | chr3:51772347-52166147 | Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 72 gene(s) | inside rSNPs | diseases |
| 2 | nsv1012847 | chr3:51811062-52056727 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 68 gene(s) | inside rSNPs | diseases |
| 3 | nsv536571 | chr3:51811062-52056727 | Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 68 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
