Variant report

Variant	rs58930875
Chromosome Location	chr17:17524828-17524829
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs4924798	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4925050	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56259755	1.00[AMR][1000 genomes]
rs56850816	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59079861	1.00[AMR][1000 genomes]
rs59304261	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60358220	0.85[AMR][1000 genomes]
rs60624876	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60811700	0.83[AMR][1000 genomes]
rs60834160	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60942595	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7212625	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73288112	1.00[AMR][1000 genomes]
rs73288121	0.83[AMR][1000 genomes]
rs73288127	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290111	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73290125	1.00[AMR][1000 genomes]
rs73290132	1.00[AMR][1000 genomes]
rs73302403	1.00[AMR][1000 genomes]
rs73302411	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907748	chr17:17412032-17782404	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
2	nsv1065270	chr17:17430116-17823086	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
3	nsv543236	chr17:17430116-17823086	Bivalent Enhancer Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
4	nsv833384	chr17:17491483-17645648	Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv869118	chr17:17509896-17599850	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17517200-17529400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr17:17524200-17525200	Enhancers	Primary B cells from cord blood	blood
3	chr17:17524400-17525800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
4	chr17:17524600-17525800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
5	chr17:17524800-17525200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
6	chr17:17524800-17525400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
7	chr17:17524800-17525400	Enhancers	Spleen	Spleen
8	chr17:17524800-17525600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr17:17524800-17526200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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