Variant report

Variant	rs58931851
Chromosome Location	chr7:117384077-117384078
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs17140391	0.83[AFR][1000 genomes]
rs34312798	0.96[AFR][1000 genomes]
rs34329593	0.99[AFR][1000 genomes]
rs34337653	0.86[AFR][1000 genomes]
rs34976943	0.83[AFR][1000 genomes]
rs35690931	0.84[AFR][1000 genomes]
rs36059768	0.95[AFR][1000 genomes]
rs6954703	0.84[AFR][1000 genomes]
rs6961987	0.91[AFR][1000 genomes]
rs981888	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464695	chr7:117342771-117393516	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv608258	chr7:117342771-117393516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117349600-117385000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:117353200-117384600	Weak transcription	Ovary	ovary
3	chr7:117354800-117417200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr7:117356200-117431400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr7:117358400-117398800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr7:117359200-117402600	Weak transcription	Spleen	Spleen
7	chr7:117362600-117394000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr7:117363200-117401000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr7:117365600-117407000	Weak transcription	Colon Smooth Muscle	Colon
10	chr7:117371800-117396000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr7:117372000-117395800	Weak transcription	Fetal Intestine Small	intestine
12	chr7:117374400-117393800	Weak transcription	Fetal Heart	heart
13	chr7:117374800-117384800	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr7:117375000-117410800	Weak transcription	Left Ventricle	heart
15	chr7:117375200-117395800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr7:117375200-117395800	Weak transcription	Pancreas	Pancrea
17	chr7:117375200-117431600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr7:117375400-117384400	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr7:117375400-117396000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr7:117375400-117402600	Weak transcription	Esophagus	oesophagus
21	chr7:117375600-117384400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr7:117375800-117406800	Weak transcription	Fetal Kidney	kidney
23	chr7:117376400-117385800	Strong transcription	Fetal Brain Female	brain
24	chr7:117378000-117386000	Strong transcription	HUES48 Cell Line	embryonic stem cell
25	chr7:117378000-117389600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:117378600-117384600	Weak transcription	Brain Angular Gyrus	brain
27	chr7:117379000-117384800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr7:117379200-117395800	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr7:117379600-117404000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr7:117381000-117390400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr7:117381200-117384600	Weak transcription	Brain Germinal Matrix	brain
32	chr7:117381400-117384600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr7:117381400-117389800	Weak transcription	Brain Substantia Nigra	brain
34	chr7:117381400-117395800	Weak transcription	Aorta	Aorta
35	chr7:117381600-117385600	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chr7:117381800-117387600	Strong transcription	Brain Inferior Temporal Lobe	brain
37	chr7:117381800-117388000	Strong transcription	Fetal Lung	lung
38	chr7:117382200-117384600	Weak transcription	Fetal Brain Male	brain
39	chr7:117382200-117387400	Strong transcription	Brain Anterior Caudate	brain
40	chr7:117382600-117385000	Weak transcription	Brain Cingulate Gyrus	brain
41	chr7:117382600-117385000	Weak transcription	Stomach Smooth Muscle	stomach
42	chr7:117382600-117395200	Weak transcription	NHLF	lung
43	chr7:117383200-117384600	Weak transcription	Fetal Stomach	stomach
44	chr7:117383200-117391000	Weak transcription	Adipose Nuclei	Adipose
45	chr7:117383200-117395800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr7:117383400-117384800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr7:117383400-117385000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
48	chr7:117383400-117385400	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr7:117383600-117384400	Weak transcription	Brain Hippocampus Middle	brain

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