Variant report

Variant	rs58932666
Chromosome Location	chr1:161313672-161313673
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs60213621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60283467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60731755	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432986	chr1:161221133-161673682	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1010776	chr1:161282384-161409218	Weak transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Genic enhancers Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:161285200-161321400	Weak transcription	Stomach Mucosa	stomach
2	chr1:161285400-161321400	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:161286800-161337400	Weak transcription	Fetal Heart	heart
4	chr1:161287000-161337400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr1:161289600-161317200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr1:161293200-161315200	Strong transcription	HUES48 Cell Line	embryonic stem cell
7	chr1:161293200-161317000	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr1:161293200-161317400	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr1:161293400-161315000	Strong transcription	Fetal Intestine Large	intestine
10	chr1:161293800-161317800	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr1:161293800-161317800	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr1:161294000-161317000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:161294000-161317200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr1:161294200-161318200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr1:161294200-161337400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr1:161294200-161338200	Weak transcription	Small Intestine	intestine
17	chr1:161295000-161317000	Strong transcription	Primary T cells fromperipheralblood	blood
18	chr1:161295000-161317800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
19	chr1:161300200-161317200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr1:161300400-161317400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:161300600-161317200	Strong transcription	HUES6 Cell Line	embryonic stem cell
22	chr1:161302000-161314200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr1:161304200-161314400	Weak transcription	A549	lung
24	chr1:161304200-161321400	Weak transcription	Gastric	stomach
25	chr1:161304600-161326600	Weak transcription	Aorta	Aorta
26	chr1:161304600-161342600	Weak transcription	Esophagus	oesophagus
27	chr1:161304800-161329000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr1:161304800-161329400	Weak transcription	Fetal Kidney	kidney
29	chr1:161304800-161334600	Weak transcription	Fetal Brain Male	brain
30	chr1:161305000-161337800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr1:161305400-161337400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr1:161305800-161326400	Weak transcription	NHLF	lung
33	chr1:161306000-161317200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
34	chr1:161306000-161317200	Strong transcription	Liver	Liver
35	chr1:161306000-161317400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr1:161306600-161316400	Weak transcription	Hela-S3	cervix
37	chr1:161306800-161317200	Strong transcription	Adipose Nuclei	Adipose
38	chr1:161307400-161337600	Weak transcription	Psoas Muscle	Psoas
39	chr1:161307800-161333000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr1:161308400-161313800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr1:161308600-161317800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr1:161308800-161315800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
43	chr1:161308800-161317200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr1:161308800-161317400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr1:161309200-161317200	Strong transcription	Primary B cells from peripheral blood	blood
46	chr1:161310000-161317800	Strong transcription	Duodenum Mucosa	Duodenum
47	chr1:161310000-161326800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr1:161310200-161317000	Strong transcription	Dnd41	blood
49	chr1:161310200-161317400	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr1:161310200-161317400	Strong transcription	Primary T cells from cord blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links