Variant report

Variant	rs58935072
Chromosome Location	chr18:11773639-11773640
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:11773035..11775049-chr18:11783906..11786264,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10048315	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10048316	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10153319	0.81[ASN][1000 genomes]
rs10164166	0.98[ASN][1000 genomes]
rs10401100	0.91[ASN][1000 genomes]
rs10401123	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10468681	0.90[ASN][1000 genomes]
rs11080534	0.97[ASN][1000 genomes]
rs12457787	0.97[ASN][1000 genomes]
rs12606210	0.95[ASN][1000 genomes]
rs12608311	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12965108	0.80[ASN][1000 genomes]
rs12965256	0.80[ASN][1000 genomes]
rs1364632	0.80[ASN][1000 genomes]
rs1364633	0.81[ASN][1000 genomes]
rs1477481	0.95[ASN][1000 genomes]
rs1477482	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16976671	0.80[ASN][1000 genomes]
rs2161961	0.98[ASN][1000 genomes]
rs4239301	0.81[ASN][1000 genomes]
rs57498102	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs57555937	0.98[ASN][1000 genomes]
rs57940204	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58285951	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58359702	0.83[ASN][1000 genomes]
rs71172021	0.80[ASN][1000 genomes]
rs7240632	0.80[ASN][1000 genomes]
rs7240684	0.81[ASN][1000 genomes]
rs72865283	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72865294	0.97[ASN][1000 genomes]
rs72867020	0.91[ASN][1000 genomes]
rs72867032	0.91[ASN][1000 genomes]
rs72867073	0.81[ASN][1000 genomes]
rs73403552	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8096000	0.81[ASN][1000 genomes]
rs8098496	0.98[ASN][1000 genomes]
rs9303748	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9303749	0.83[ASN][1000 genomes]
rs9944802	0.90[ASN][1000 genomes]
rs9945211	0.81[ASN][1000 genomes]
rs9962277	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9972997	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3362008	chr18:11647654-11959830	Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv833590	chr18:11757329-11924539	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:11752800-11774000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr18:11753000-11774800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr18:11753000-11775400	Weak transcription	Gastric	stomach
4	chr18:11758400-11785600	Weak transcription	Brain Anterior Caudate	brain
5	chr18:11763400-11780400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr18:11767600-11785400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr18:11767600-11789000	Weak transcription	Esophagus	oesophagus
8	chr18:11767800-11783800	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr18:11767800-11784000	Weak transcription	Aorta	Aorta
10	chr18:11771800-11783800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr18:11772400-11780600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr18:11773400-11784600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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