Variant report

Variant	rs58936609
Chromosome Location	chr14:81738334-81738335
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81738210..81741062-chr14:81743427..81745405,2	K562	blood:
2	chr14:81686299..81687927-chr14:81738274..81739791,2	MCF-7	breast:
3	chr14:81736225..81738545-chr14:81918216..81919957,2	MCF-7	breast:
4	chr14:81685475..81687866-chr14:81737808..81743096,5	MCF-7	breast:
5	chr14:81737378..81740032-chr14:81921509..81923420,2	K562	blood:

Variant related genes	Relation type
ENSG00000140022	Chromatin interaction
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17111668	1.00[AMR][1000 genomes]
rs8011306	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81714200-81738600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:81721200-81742400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr14:81721400-81739800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:81721600-81739800	Weak transcription	Ovary	ovary
5	chr14:81722600-81741800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr14:81724600-81741800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr14:81724600-81746000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr14:81725000-81739800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:81725000-81740000	Weak transcription	Esophagus	oesophagus
10	chr14:81725000-81743600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr14:81727800-81746200	Weak transcription	NHDF-Ad	bronchial
12	chr14:81729400-81752600	Weak transcription	Stomach Mucosa	stomach
13	chr14:81730600-81743000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr14:81730600-81744000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr14:81730800-81740000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr14:81730800-81743600	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr14:81731600-81739200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr14:81732400-81743600	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr14:81733200-81753000	Weak transcription	Hela-S3	cervix
20	chr14:81734600-81741400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr14:81734600-81742400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr14:81734800-81738800	Weak transcription	HSMMtube	muscle
23	chr14:81734800-81743000	Weak transcription	Placenta	Placenta
24	chr14:81734800-81743400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr14:81734800-81744000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr14:81735000-81739200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr14:81735000-81739600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr14:81735000-81739600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr14:81735200-81738400	Strong transcription	NHEK	skin
30	chr14:81735400-81739600	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr14:81735600-81739000	Weak transcription	HMEC	breast
32	chr14:81735600-81760200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr14:81735800-81743000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr14:81735800-81746400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr14:81736000-81741800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr14:81736000-81743400	Weak transcription	Fetal Intestine Large	intestine
37	chr14:81736000-81746000	Weak transcription	Duodenum Mucosa	Duodenum
38	chr14:81736200-81742000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr14:81736400-81738800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr14:81736400-81739000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr14:81736400-81746600	Weak transcription	Liver	Liver
42	chr14:81736600-81742400	Weak transcription	Fetal Stomach	stomach
43	chr14:81736800-81740800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr14:81736800-81741200	Weak transcription	Brain Substantia Nigra	brain
45	chr14:81737000-81744200	Weak transcription	Rectal Smooth Muscle	rectum
46	chr14:81737200-81738600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr14:81737200-81739400	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr14:81737200-81740000	Weak transcription	Fetal Muscle Trunk	muscle
49	chr14:81737200-81740800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
50	chr14:81737200-81740800	Weak transcription	Brain Hippocampus Middle	brain

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