Variant report

Variant	rs58940927
Chromosome Location	chr15:45075415-45075416
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:44954130..44956261-chr15:45073217..45077809,7	K562	blood:
2	chr15:45074115..45076771-chr15:45078811..45081683,3	K562	blood:
3	chr15:44949692..44958566-chr15:45073635..45082479,18	K562	blood:
4	chr15:44970663..44972208-chr15:45073819..45076712,2	K562	blood:
5	chr15:45050487..45053149-chr15:45073962..45077607,3	K562	blood:
6	chr15:44829337..44830847-chr15:45073722..45076273,2	K562	blood:
7	chr15:45007223..45009349-chr15:45075066..45077596,2	K562	blood:
8	chr15:45068193..45071978-chr15:45073632..45077696,5	K562	blood:

No data

Variant related genes	Relation type
ENSG00000104131	Chromatin interaction
ENSG00000166710	Chromatin interaction
ENSG00000185880	Chromatin interaction
ENSG00000104133	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758380	chr15:44968868-45422842	Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
2	esv2760029	chr15:44968868-45422842	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	95 gene(s)	inside rSNPs	diseases
3	nsv832990	chr15:44990765-45162714	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
4	nsv916374	chr15:45058112-45769052	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
5	nsv819242	chr15:45059351-45078608	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
6	nsv457123	chr15:45074519-45099142	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
7	nsv569302	chr15:45074519-45099142	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45047600-45076000	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr15:45057200-45076000	Weak transcription	Brain Anterior Caudate	brain
3	chr15:45072600-45075800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr15:45073600-45076000	Enhancers	HMEC	breast
5	chr15:45073600-45076200	Weak transcription	Brain Angular Gyrus	brain
6	chr15:45073800-45076000	Weak transcription	Brain Hippocampus Middle	brain
7	chr15:45073800-45076200	Weak transcription	Brain Substantia Nigra	brain
8	chr15:45074000-45076000	Enhancers	K562	blood
9	chr15:45074200-45076000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr15:45074200-45076000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:45074200-45076000	Weak transcription	HepG2	liver
12	chr15:45075200-45076200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr15:45075200-45076200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr15:45075200-45076200	Enhancers	Hela-S3	cervix
15	chr15:45075200-45076400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr15:45075200-45076400	Weak transcription	Fetal Muscle Leg	muscle
17	chr15:45075400-45075600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr15:45075400-45075800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:45075400-45076200	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr15:45075400-45076200	Enhancers	HUVEC	blood vessel
21	chr15:45075400-45076400	Weak transcription	HSMM	muscle
22	chr15:45075400-45076400	Weak transcription	HSMMtube	muscle

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