Variant report

Variant	rs58951469
Chromosome Location	chr12:117290569-117290570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117288832..117290642-chr12:117297295..117299164,3	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16947055	0.92[AFR][1000 genomes]
rs4432105	0.88[AFR][1000 genomes]
rs55824940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58593739	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407273	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407286	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73407288	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117259400-117294400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:117263000-117296000	Weak transcription	Brain Angular Gyrus	brain
3	chr12:117269600-117291600	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr12:117273800-117296800	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr12:117274000-117290800	Weak transcription	Dnd41	blood
6	chr12:117274200-117290800	Weak transcription	Thymus	Thymus
7	chr12:117274400-117291600	Weak transcription	Primary T cells from cord blood	blood
8	chr12:117275600-117297600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr12:117276000-117296000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:117276600-117294600	Weak transcription	Primary B cells from cord blood	blood
11	chr12:117276800-117296200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr12:117287600-117296200	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr12:117288800-117293800	Enhancers	Fetal Thymus	thymus
14	chr12:117289000-117294400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:117289600-117290600	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr12:117289800-117290600	Enhancers	Brain Germinal Matrix	brain
17	chr12:117290000-117290600	Enhancers	Fetal Brain Male	brain
18	chr12:117290200-117290600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr12:117290200-117296000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr12:117290200-117296200	Weak transcription	Fetal Brain Female	brain

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