Variant report

Variant	rs58953077
Chromosome Location	chr2:21510295-21510296
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs13396400	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011486	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv535602	chr2:21475803-22364002	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:21493400-21511200	Weak transcription	Aorta	Aorta
2	chr2:21503200-21511800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr2:21505000-21511800	Weak transcription	Fetal Brain Male	brain
4	chr2:21505400-21510600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr2:21505400-21510600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:21505400-21511200	Weak transcription	Brain Anterior Caudate	brain
7	chr2:21505800-21511000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:21506400-21510800	Weak transcription	Brain Hippocampus Middle	brain
9	chr2:21506400-21511000	Weak transcription	Brain Substantia Nigra	brain
10	chr2:21506400-21511600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr2:21506600-21510600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr2:21506600-21510800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr2:21508200-21511200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr2:21509600-21510400	Enhancers	K562	blood
15	chr2:21509600-21511200	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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