Variant report

Variant	rs58955634
Chromosome Location	chr1:57892876-57892877
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:57892830-57892880	HCPEpiC	choroid plexus:	n/a
2	chr1:57892830-57892880	HRCEpiC	kidney:	n/a
3	chr1:57892830-57892880	SKMC	muscle:	n/a
4	chr1:57892830-57892880	MCF10A-Er-Src	breast:	n/a
5	chr1:57892830-57892880	IMR90	lung:	fetal
6	chr1:57892830-57892880	AG04449	skin:	fetal
7	chr1:57892830-57892880	HAEpiC	amniotic membrane:	n/a
8	chr1:57892830-57892880	Caco-2	colon:	n/a
9	chr1:57892830-57892880	ovcar-3	ovarian:	n/a
10	chr1:57892830-57892880	PFSK-1	brain:	n/a
11	chr1:57892830-57892880	AG09319	gingival:	n/a
12	chr1:57892830-57892880	BJ	skin:	n/a
13	chr1:57892830-57892880	SAEC	small airway:	n/a
14	chr1:57892830-57892880	HPAEpiC	pulmonary alveolar:	n/a
15	chr1:57892830-57892880	NHDF-neo	bronchial:	n/a
16	chr1:57892830-57892880	BE2_C	brain:	n/a
17	chr1:57892830-57892880	U87	brain:	n/a
18	chr1:57892830-57892880	A549	lung:	n/a
19	chr1:57892830-57892880	AG10803	skin:	n/a
20	chr1:57892830-57892880	Jurkat	blood:	n/a
21	chr1:57892830-57892880	HMEC	breast:	n/a
22	chr1:57892830-57892880	CMK	blood:	n/a
23	chr1:57892830-57892880	HIPEpiC	eye:	n/a
24	chr1:57892830-57892880	HRPEpiC	eye:	n/a
25	chr1:57892830-57892880	ECC-1	luminal epithelium:	n/a
26	chr1:57892830-57892880	Hela-S3	cervix:	n/a
27	chr1:57892830-57892880	HEK293	kidney:	embryo
28	chr1:57892830-57892880	HRE	kidney:	n/a
29	chr1:57892830-57892880	HepG2	liver:	n/a
30	chr1:57892830-57892880	NHBE	bronchial:	n/a
31	chr1:57892830-57892880	GM06990	blood:	n/a
32	chr1:57892830-57892880	AG04450	lung:	fetal
33	chr1:57892830-57892880	AG09309	skin:	n/a
34	chr1:57892830-57892880	NB4	blood:	n/a
35	chr1:57892830-57892880	MCF-7	breast:	n/a
36	chr1:57892830-57892880	HEEpiC	esophagus:	n/a
37	chr1:57892830-57892880	SK-N-MC	brain:	n/a
38	chr1:57892830-57892880	PANC-1	pancreas:	n/a
39	chr1:57892830-57892880	HL-60	blood:	n/a
40	chr1:57892830-57892880	PrEC	prostate:	n/a
41	chr1:57892830-57892880	H1-hESC	embryonic stem cell:	embryo
42	chr1:57892830-57892880	HCT-116	colon:	n/a
43	chr1:57892830-57892880	HNPCEpiC	eye:	n/a
44	chr1:57892830-57892880	HCF	heart:	n/a
45	chr1:57892830-57892880	LNCaP	prostate:	n/a
46	chr1:57892830-57892880	NT2-D1	testis:	n/a
47	chr1:57892830-57892880	SK-N-SH_RA	brain:	n/a
48	chr1:57892830-57892880	K562	blood:	n/a
49	chr1:57892830-57892880	SK-N-SH	brain:	n/a
50	chr1:57892830-57892880	HUVEC	blood vessel:	n/a

No data

Variant related genes	Relation type
DAB1	CpG island

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11207033	0.81[EUR][1000 genomes]
rs56034757	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56350344	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58117306	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59422555	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61138078	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv817216	chr1:57801783-58130775	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1001771	chr1:57837089-58068175	Bivalent/Poised TSS Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv870908	chr1:57884310-58037783	Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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