Variant report

Variant	rs58956780
Chromosome Location	chr8:60947317-60947318
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs59690563	1.00[AMR][1000 genomes]
rs60618306	1.00[AMR][1000 genomes]
rs61700987	1.00[AMR][1000 genomes]
rs73243940	1.00[AMR][1000 genomes]
rs73243948	1.00[AMR][1000 genomes]
rs73243989	1.00[AMR][1000 genomes]
rs73243992	1.00[AMR][1000 genomes]
rs73243994	1.00[AMR][1000 genomes]
rs73245610	1.00[AMR][1000 genomes]
rs73245619	1.00[AMR][1000 genomes]
rs73245642	1.00[AMR][1000 genomes]
rs73257515	1.00[AMR][1000 genomes]
rs73257516	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831331	chr8:60770382-60959633	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv917756	chr8:60942299-61862796	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:60940000-60968400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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